CexoR
CexoR
Strand specific peak-pair calling in ChIP-exo replicates.
Strand specific peak-pair calling in ChIP-exo replicates.
DFilter
DFilter
A detection algorithm that identifies regulatory features in ChIP-seq, DNase-seq and…
A detection algorithm that identifies regulatory features in ChIP-seq, DNase-seq and FAIRE-seq data more accurately than assay-specific algorithms. The mathematical formalism underlying DFilter facilitates integrative analysis of data from virtually…
Model based Analysis of ChIP-exo
Model based Analysis of ChIP-exo
MACE
A bioinformatics tool dedicated to analyze ChIP-exo data: 1) Sequencing depth…
A bioinformatics tool dedicated to analyze ChIP-exo data: 1) Sequencing depth normalization and nucleotide composition bias correction. 2) Signal consolidation and noise reduction. 3) Single base resolution border detection. 4) Border matching.