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ChIP-on-Chip online CoCo

Obsolete

A web-based tool dedicated to ChIP-on-chip data visualization, analysis and knowledge storage. To support target gene assignment, CoCo integrates diverse types of meta-data, including the genomic context around the transcription factor (TF)-bound regions, in situ hybridization data indicating the tissues where neighbouring genes are expressed, and expression profiling data indicating the response of surrounding genes to different perturbations. As a specialized tool, CoCo implements several features adapted to ChIP-on-chip data visualization and provides key requirements for the management of complex analysis projects. To visualize large numbers of experiments simultaneously, the CoCo display is designed to pack essential features together, rather than stacking data in sequential tracks as in the generic data displays offered by genome browsers such as GBrowse, UCSC or Ensembl.

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CoCo classification

CoCo specifications

Interface:
Web user interface
Computer skills:
Basic
Maintained:
No
Restrictions to use:
None
Stability:
Stable

CoCo support

Maintainer

This tool is not available anymore.

Credits

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Publications

Institution(s)

European Molecular Biology Laboratory, Heidelberg, Germany; European Bioinformatics Institute, European Molecular Biology Laboratory, Cambridge, UK

Funding source(s)

This work was supported by EMBL, and in part by the EU FP6 network MyoRes.

Link to literature

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