SeqSite specifications

Unique identifier:
OMICS_00493
Software type:
Package/Module
Restrictions to use:
Academic or non-commercial use
Input format:
BED
Output format:
BED+BAR
Programming languages:
C, C++
Version:
1.1.2
Source code URL:
http://bioinfo.au.tsinghua.edu.cn/seqsite/download.php?pl=src&ver=1.1.
Name:
ChIP-Seq Binding Site Identification
Interface:
Command line interface
Input data:
Some ChIP-seq data.
Output data:
A file that archives all detected binding regions, with statistical significance levels and a file that archives all identified binding sites with the normalized scores indicating binding affinity.
Operating system:
Unix/Linux, Windows
Computer skills:
Advanced
Stability:
Stable
Maintained:
Yes

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SeqSite support

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Publications

Institution(s)

MOE Key Laboratory of Bioinformatics and Bioinformatics Division, TNLIST / Department of Automation, Tsinghua University, Beijing, China

Funding source(s)

Partially supported by the National Basic Research Program of China (2012CB316504) and NSFC grants (Nos. 30625012, 60721003 and 60928007).

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