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Chromatin immunoprecipitation followed by sequencing (ChIP-seq), first described in 2007 (Barski et al., 2007; Johnson et al., 2007; Mikkelsen et al., 2007; Robertson et al., 2007), allows in vivo determination of where a protein binds the genome, which can be transcription factors, DNA-binding enzymes, histones, chaperones, or nucleosomes (Park, 2009; Furey, 2012).
Aides the acquisition, storage, analysis and publication of DNA barcode…
Aides the acquisition, storage, analysis and publication of DNA barcode records. BOLD is a cloud-based data storage and analysis platform which consists of four main modules: a data portal, an…
Allows labs of all sizes to easily install bioinformatics software, maintain…
Allows labs of all sizes to easily install bioinformatics software, maintain multiple versions of the same software and combine tools into powerful analysis pipelines. BioContainers is based on…
Provides web-based access to a collection of bioinformatics tools developed for…
Provides web-based access to a collection of bioinformatics tools developed for systems biology, protein sequence annotation, and expression data analysis. ZBIT Bioinformatics Toolbox is designed to…
A suite of programs for interacting with high-throughput sequencing data. It…
A suite of programs for interacting with high-throughput sequencing data. It can manipulate alignments in the SAM/BAM/CRAM formats : reading, writing, editing, indexing, viewing and converting…
A suite of tools for Motif Discovery and next-gen sequencing analysis. HOMER…
A suite of tools for Motif Discovery and next-gen sequencing analysis. HOMER contains many useful tools for analyzing ChIP-Seq, GRO-Seq, RNA-Seq, DNase-Seq, Hi-C and numerous other types of…
A computational-based approach that infers quality indicators from the…
A computational-based approach that infers quality indicators from the distribution of sequenced reads associated to a particular NGS profile.
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