Main logo
?
tutorial arrow
×
Create your own tool library
Bookmark tools and put favorites into folders to find them easily.

ChIP-seq | A resource for analyzing ChIP-seq and other types of genomic data

Provides access to a set of useful tools performing common ChIP-Seq data analysis tasks. The ChIP-Seq Web Server also includes positional correlation analysis, peak detection, and genome partitioning into signal-rich and signal-poor regions. The server also provides access to hundreds of publicly available data sets such as ChIP-seq data, RNA-seq data (i.e. CAGE), DNA-methylation data, sequence annotations (promoters, polyA-sites, etc.), and sequence-derived features (CpG, phastCons scores).

User report

tutorial arrow
×
Vote up tools and offer feedback
Give value to tools and make your expertise visible
Give your feedback on this tool
Sign up for free to join and share with the community

0 user reviews

star_border star_border star_border star_border star_border
star star star star star

0 user reviews

star_border star_border star_border star_border star_border
star star star star star

No review has been posted.

ChIP-seq forum

tutorial arrow
×
Communicate with other users
Participate in the forum to get support for using tools. Ask questions about technical specifications.
Take part in the discussion
Sign up for free to ask question and share your advices

No open topic.

ChIP-seq classification

ChIP-seq specifications

Unique identifier:
OMICS_02103
Interface:
Command line interface, Graphical user interface
Input data:
Sequence data
Output data:
sga, fps, bed, wig
Operating system:
Unix/Linux, Mac OS
License:
GNU General Public License version 2.0
Version:
1.5-0
Maintained:
Yes
Software type:
Pipeline/Workflow
Restrictions to use:
Academic or non-commercial use
Input format:
BAM, BED, SGA, FPS, GFF
Biological technology:
Illumina
Programming languages:
C, Javascript, Perl, PHP, R
Computer skills:
Advanced
Stability:
Stable

ChIP-seq distribution

versioning

tutorial arrow
×
Upload and version your source code
Get a DOI for each update to improve tool traceability. Archive your releases so the community can easily visualize progress on your work.
Facilitate your tool traceability
Sign up for free to upload your code and get a DOI

No versioning.

User report

tutorial arrow
×
Vote up tools and offer feedback
Give value to tools and make your expertise visible
Give your feedback on this tool
Sign up for free to join and share with the community

0 user reviews

star_border star_border star_border star_border star_border
star star star star star

0 user reviews

star_border star_border star_border star_border star_border
star star star star star

No review has been posted.

ChIP-seq forum

tutorial arrow
×
Communicate with other users
Participate in the forum to get support for using tools. Ask questions about technical specifications.
Take part in the discussion
Sign up for free to ask question and share your advices

No open topic.

ChIP-seq classification

ChIP-seq specifications

Unique identifier:
OMICS_02103
Restrictions to use:
None
Programming languages:
C, Perl
Computer skills:
Basic
Stability:
Stable
Interface:
Web user interface
Biological technology:
Illumina
License:
GNU General Public License version 3.0
Version:
1.5.3
Maintained:
Yes

ChIP-seq distribution

download

ChIP-seq support

Documentation

Credits

tutorial arrow
×
Promote your skills
Define all the tasks you managed and assign your profile the appropriate badges. Become an active member.
Promote your work
Sign up for free to badge your contributorship

Publications

Institution(s)

School of Life Sciences, Ecole Polytechnique Fédérale de Lausanne (EPFL), Lausanne, Switzerland; Swiss Institute of Bioinformatics (SIB), Lausanne, Switzerland

Funding source(s)

This work was supported by Swiss National Science Foundation (SNSF) grant 31003A-125193, the Swiss Government via a grant to the Swiss Institute of Bioinformatics, and the SNSF grant CRSII3_154500.

By using OMICtools you acknowledge that you have read and accepted the terms of the end user license agreement.