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Enables to explore the transcriptional regulatory networks of noncoding RNAs (ncRNAs) and protein-coding genes (PCGs). ChIPBase is an open database that integrates many ChIPseq peak datasets of trans-acting factors, including transcription factors (TFs), transcription cofactors (TCFs), chromatin-remodeling factors (CRFs), other DNA-binding proteins and histone modifications. The database consists of nine web-based modules and tools.

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ChIPBase classification

  • Animals
  • Fungi
  • Plants
  • Protists

ChIPBase specifications

Restrictions to use:
Community driven:
User data submission:
Not allowed
Database management system:
Data access:
File download, Browse


  • Co-Expression
  • ChIP-Function

ChIPBase support


  • Jian-Hua Yang <>
  • Liang-Hu Qu <>
  • Ke-Ren Zhou <>


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Key Laboratory of Gene Engineering of the Ministry of Education, State Key Laboratory for Biocontrol, Sun Yat-sen University, Guangzhou, China

Funding source(s)

This work was supported by Ministry of Science and Technology of China; National Basic Research Program [2011CB811300]; National Natural Science Foundation of China [31230042, 31370791, 31401975, 31471223, 91440110, 31671349]; Guangdong Province Funds [S2012010010510, S2013010012457]; The project of Science and Technology New Star in ZhuJiang Guangzhou city [2012J2200025]; Fundamental Research Funds for the Central Universities [2011330003161070, 14lgjc18]; China Postdoctoral Science Foundation [200902348]; Guangdong Province Key Laboratory of Computational Science; Guangdong Province Computational Science Innovative Research Team.

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