ChIPComp specifications

Information


Unique identifier OMICS_07536
Name ChIPComp
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


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Maintainer


  • person_outline Hao Wu <>

Publication for ChIPComp

ChIPComp in publication

PMCID: 5142015
PMID: 26764273
DOI: 10.1093/bib/bbv110

[…] transcription factor binding sites.however, analysis of functional enrichments based on neighboring genes appears to be more robust.some tools give good results with default parameters, like chipcomp or diffbind when replicates are available, or manorm, homer, macs2bdgdiff and rseg with single replicates. the other tools would require more extensive fine-tuning of parameters to achieve […]


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ChIPComp institution(s)
Department of Mathematics and Computer Science, Atlanta, GA, USA; Department of Biostatistics and Markey Cancer Center, University of Kentucky, Lexington, KY, USA; Department of Biostatistics and Bioinformatics, Emory University, Atlanta, GA, USA; Department of Biomedical Informatics, Emory University, Atlanta, GA, USA
ChIPComp funding source(s)
Supported by the National Center for Advancing Translational Sciences of the National Institutes of Health under Award Number UL1TR000454, the National Human Genome Research Institute of the National Institutes of Health under Award Number R01 HG005119 and National Institute of General Medical Sciences of the National Institutes of Health under Award Number P01 GM085354.

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