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ChIpInspector specifications


Unique identifier OMICS_26681
Name ChIpInspector
Software type Application/Script
Interface Graphical user interface
Restrictions to use License purchase required
Biological technology Illumina, Affymetrix
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
Computer skills Medium
Version 2.1
Stability Stable
Free trial Yes
Registration required Yes
Maintained No


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ChIpInspector in publications

PMCID: 5444826
PMID: 28542499
DOI: 10.1371/journal.pone.0178368

[…] (5μm, single pass, 20 bit, no xdr). micro array scan data were extracted with feature extraction software (agilent). after elimination of noise and flagged signals data were analyzed with chipinspector (genomatix). gene regulated more than 2 fold with a mean signal bigger 100 in at least one of the groups were considered for further analysis., taqman pcr assays were performed […]

PMCID: 5687616
PMID: 29179446
DOI: 10.18632/oncotarget.11381

[…] to a genechip human gene 1.0 st arrays using genechip hybridization, wash, and stain kit (affymetrix). the arrays were scanned on a genechip scanner 3000 7g. affymetrix array data were analyzed by chipinspector 2.1 (genomatix). transcripts were considered significantly regulated if at least 3 significant probes mapped to them and the log2 fold change of the transcript calculated […]

PMCID: 4750092
PMID: 26864856
DOI: 10.1038/srep20957

[…] 2015 and scanned with the genechip® scanner 3000 7g (#00–0210, affymetrix® microarray solutions). cel files generated by the affymetrix® genechip® command console® software (agcc) were imported into chipinspector software, version 21 (el dorado database version: e30r1410 genomatix gmbh). differential expression between dmso and aza (500 nm) treated samples was analyzed using the group-wise […]

PMCID: 4760405
PMID: 26733244
DOI: 10.14814/phy2.12661

[…] the arrays were scanned with agilent g2565ca microarray scanner. the resulting tiff files were processed with agilent feature extraction software 10.7. the raw data generated were evaluated using chipinspector software (genomatix, munich, germany). the microarray expression data were analyzed using the r/bioconductor through a graphical user interface, chipster (v1.4.3, csc, finland, […]

PMCID: 4949513
PMID: 25800823
DOI: 10.1111/liv.12830

[…] probes, corresponding to 119 genes previously not found on the array (agilent technologies). raw data were extracted using feature extraction software (agilent technologies) and analysed with chipinspector (genomatix software, munich, germany). fold change values were calculated for each gene in response to ifn‐α and ifn‐γ (mean signal value treatment/mean signal value mock), as well […]

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