ChIPMonk specifications

Information


Unique identifier OMICS_02043
Name ChIPMonk
Software type Application/Script
Interface Graphical user interface
Restrictions to use None
Operating system Mac OS, Windows
Programming languages Java
License GNU General Public License version 2.0
Computer skills Medium
Stability Stable
Maintained Yes

Versioning


No version available

Maintainer


  • person_outline Simon Andrews

Publication for ChIPMonk

ChIPMonk citations

 (2)
library_books

Frequent Long Range Epigenetic Silencing of Protocadherin Gene Clusters on Chromosome 5q31 in Wilms' Tumor

2009
PLoS Genet
PMCID: 2776977
PMID: 19956686
DOI: 10.1371/journal.pgen.1000745

[…] ) and ligation-mediated PCR (LM-PCR) was carried out as described ,. DNAs were then sent to Nimblegen for labelling and hybridization to Nimblegen HG18 Refseq promoter arrays. Data was analysed using ChipMonk v1.2.1 tiling array analysis software (Dr Simon Andrews, Babraham Institute, Cambridge UK, http://www.bioinformatics.bbsrc.ac.uk/projects/chipmonk). To identify hypermethylated CGIs, a log2ra […]

library_books

Global Mapping of DNA Methylation in Mouse Promoters Reveals Epigenetic Reprogramming of Pluripotency Genes

2008
PLoS Genet
PMCID: 2432031
PMID: 18584034
DOI: 10.1371/journal.pgen.1000116

[…] ouse promoter arrays. Dye-swapping was done for one replicate of every tissue type to reduce signal error due to dye bias. Initial data preparation was performed using the in-house developed software ChIPMonk (http://www.bioinformatics.bbsrc.ac.uk/projects /chipmonk/). The raw array data were subjected to a Lowess normalisation. […]

ChIPMonk institution(s)
The Babraham Institute, Cambridge, UK

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