ChIPnorm protocols

View ChIPnorm computational protocol

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ChIPnorm specifications

Information


Unique identifier OMICS_08445
Name ChIPnorm
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Bernard M. E. Moret <>

Publication for ChIPnorm

ChIPnorm in pipeline

2013
PMCID: 3717085
PMID: 23721376
DOI: 10.1186/1471-2105-14-169

[…] definitions on the difference between the two experiments. furthermore, it is not implementable for those peak-finder methods that do not use control information. more recent methods, such as chipnorm [], allow to compare two experiments on two proteins at the same time, but somewhat sidestep the issue of different ip efficiencies by focussing on regions with high signal to background […]


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ChIPnorm in publication

PMCID: 3299739
PMID: 22427974
DOI: 10.1371/journal.pone.0033151

[…] gene expression, and this study utilizes chip-seq to classify activating h3k4me3 and silencing h3k27me3 marks on a genome-wide scale for soil-grown mature and naturally senescent arabidopsis leaves. chipnorm was used to normalize data sets and identify genomic regions with significant differences in the two histone methylation patterns, and the differences were correlated to changes in gene […]


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ChIPnorm institution(s)
Laboratory for Computational Biology and Bioinformatics, School of Computer and Communication Sciences, Ecole Polytechnique Federale de Lausanne (EPFL), Lausanne, Switzerland; Department of Computer Science, University of Maryland, MD, USA; School of Life Sciences, Ecole Polytechnique Federale de Lausanne (EPFL), Lausanne, Switzerland; Swiss Institute for Bioinformatics, Lausanne, Switzerland
ChIPnorm funding source(s)
Supported by a grant from the Swiss National Science Foundation.

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