Alternative name: ChIPOTle Peak Finder | ChIPOTle 2.0 Peak Discrimination Tool
Performs peak detection in chromatin immunoprecipitation (ChIP)-chip signal. ChIPOTle was created for the analysis of ChIP-chip data obtained using tiled arrays, which allow to exploit both the 'single-tail' and 'neighbour effect'. The software uses a sliding window approach to identify potential sites of enrichment, and then estimates the significance of enrichment for a genomic region using a standard Gaussian error function. It also allows multiple correction testing, signal normalization, replication merging, and probe sorting.