ChIPper statistics

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Associated diseases

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ChIPper specifications

Information


Unique identifier OMICS_24616
Name ChIPper
Interface Web user interface
Restrictions to use Academic or non-commercial use
Programming languages R
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Frederick Roth <>

Additional information


http://llama.mshri.on.ca/Chipper/chip3_whats_new.html

Information


Unique identifier OMICS_24616
Name ChIPper
Software type Application/Script
Interface Command line interface
Restrictions to use Academic or non-commercial use
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
Computer skills Advanced
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Frederick Roth <>

Additional information


http://llama.mshri.on.ca/Chipper/chip3_whats_new.html

Publication for ChIPper

ChIPper in publications

 (2)
PMCID: 4684283
PMID: 26684201
DOI: 10.1371/journal.pgen.1005719

[…] compatible with integrated genome browser (igb) (affymetrix). igb was used to represent the data as log2 ratios for individual experiments (version 8.0.1)[]., for replicate experiments we used the chipper software [] with minor modifications. chipper analysis generates the significance (p-values) of enrichment obtained from individual experiments using variance stabilization and not log2 […]

PMCID: 2651779
PMID: 19129219
DOI: 10.1093/nar/gkn1051

[…] inc., usa). spots that did not meet the quality control parameters after visual inspection or by the analysis software were discarded. raw median values were normalized using the software chipper. data is returned ranked according to increasing p-value. for each cpg clone, the ranked p-value is from two datasets for each antibody (anti-irf1 or normal rabbit igg). target loci […]


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ChIPper institution(s)
Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA, USA; Instituto de Biología Molecular y Celular de Plantas (IBMCP), Universidad Politécnica de Valencia, Valencia, Spain
ChIPper funding source(s)
Supported in part by Funds for Discovery; by an institutional grant from the HHMI Biomedical Research Support Program for Medical Schools; by NIH/NIGMS grants GM30186, GM53720, and NIH/NHGRI grant HG003147; by an EMBO Long Term Fellowship and the 'Ramón y Cajal' program of the Spanish Ministry of Science.

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