ChIPseeker specifications

Information


Unique identifier OMICS_07711
Name ChIPseeker
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License Artistic License version 2.0
Computer skills Advanced
Version 1.2.5
Stability Stable
Maintained Yes

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Documentation


Maintainer


  • person_outline Guangchuang Yu <>

ChIPseeker article

ChIPseeker citation

2018
PMCID: 5873942

[…] [11]., genome-wide peak coverage analysis and average occupancy profile for nf90/nf110 chip-seq data was performed in r with the chipseeker package and deeptools [74, 75]. motif enrichment analysis and gene annotation of nf90/nf110 chip-seq peaks were computed using hypergeometric optimization of motif enrichment (homer) [76]. […]

ChIPseeker institution(s)
Key Laboratory of Functional Protein Research of Guangdong Higher Education Institutes, College of Life Science and Technology, Jinan University, Guangzhou, China; State Key Laboratory of Emerging Infectious Diseases, School of Public Health, The University of Hong Kong, Hong Kong, China; Guangdong Information Center, Guangzhou, China

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