ChIPsim specifications

Information


Unique identifier OMICS_02042
Name ChIPsim
Software type Framework/Library, Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 2.0
Computer skills Advanced
Version 1.34.0
Stability Stable
Requirements
methods, stats, graphics, IRanges, utils, ShortRead, Biostrings, XVector, Biostrings(>=2.29.2), actuar, zoo
Maintained Yes

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Documentation


ChIPsim in publication

PMCID: 5429005
PMID: 27169896
DOI: 10.1093/bib/bbw035

[…] for a more complete list of features and peak calling methods., chip-seq data representing transcription factor binding and corresponding input samples are simulated using functions adapted from the chipsim [] bioconductor [] package in r [] that are in turn based on []. the data are simulated for pairs of chip and corresponding input samples under three noise settings—high noise, medium noise […]


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