Chipster specifications

Information


Unique identifier OMICS_00751
Software type Pipeline/Workflow
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
License GNU General Public License version 3.0
Computer skills Medium
Version 3.12
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Eija Korpelainen <>

Chipster article

Chipster citation

2015
PMCID: 4585671

[…] considered significant in the ipa analyses., the expression patterns of the genes that were differentially expressed between the cases and controls in the rna-seq were visually evaluated using the chipster genome browser and heat maps produced with cummerbund. based on this evaluation, we excluded genes that showed clearly overlapping expression pattern between the case and control pools. […]

Chipster institution(s)
CSC - IT Center for Science, Keilaranta, Keilaniemi, Espoo, Finland; Finnish Red Cross Blood Service, Helsinki, Finland; Department of Pathology, VU University Medical Center, Amsterdam, Netherlands; Department of Pathology, Haartman Institute and HUSLAB, University of Helsinki and Helsinki University Central Hospital, Finland; FIMM Technology Centre, Institute for Molecular Medicine Finland (FIMM), University of Helsinki, Finland; Futurice, Helsinki, Finland
Chipster funding source(s)
Supported by a grant from Tekes - the Finnish Funding Agency for Technology and Innovation under the SYSBIO Research Programme; by the EMBRACE project grant which is funded by the European Commission within its FP6 Programme, under the thematic area “Life sciences, genomics and biotechnology for health”, contract number LUNG-CT-2004-512092.

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