ChIPXpress statistics

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ChIPXpress specifications


Unique identifier OMICS_00516
Name ChIPXpress
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Some predicted TF bound genes from ChIPx data.
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 2.0
Computer skills Advanced
Version 1.25.0
Stability Stable
BiocGenerics, Biobase, GEOquery, R(>=2.10), ChIPXpressData, frma, affy, bigmemory, biganalytics, mouse4302frmavecs, mouse4302.db, mouse4302cdf, RUnit
Maintained Yes



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  • person_outline Hongkai Ji <>
  • person_outline George Wu <>

Publication for ChIPXpress

ChIPXpress in publication

PMCID: 5864921
PMID: 29568088
DOI: 10.1038/s41598-018-23417-z

[…] of note (fig.¬†)., to confirm the association between pax6 expression and pax6 target genes, we assessed correlations in a compendium of 18 000 gene expression data sets available from geo using the chipxpress r package. results show overall low scores, meaning high correlations between expression levels of pax6 and the target genes (table¬†).table 2, to our knowledge, we are the first group […]

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ChIPXpress institution(s)
Department of Biostatistics, Johns Hopkins University Bloomberg School of Public Health, Baltimore, MD, USA
ChIPXpress funding source(s)
Supported by the National Institute of Health grant R01HG006282.

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