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ChlamyCyc specifications

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Unique identifier OMICS_23214
Name ChlamyCyc
Restrictions to use None
Community driven No
Data access File download, Browse
User data submission Not allowed
Version 2.0
Registration required Yes
Maintained No

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Publication for ChlamyCyc

ChlamyCyc citations

 (4)
call_split

Substrates of the chloroplast small heat shock proteins 22E/F point to thermolability as a regulative switch for heat acclimation in Chlamydomonas reinhardtii

2017
Plant Mol Biol
PMCID: 5700999
PMID: 29094278
DOI: 10.1007/s11103-017-0672-y
call_split See protocol

[…] searched against a reference database including all predicted nuclear-encoded protein sequences of Chlamydomonas reinhardtii (JGI v5.5), as well as all mitochondrial and chloroplast proteins (http://chlamycyc.mpimp-golm.mpg.de/files/sequences/protein/). Peptide identification, protein assembly, and label-free quantification was performed using the MaxQuant Software (Version 1.5.3.8) with the “mat […]

library_books

New Features on the Environmental Regulation of Metabolism Revealed by Modeling the Cellular Proteomic Adaptations Induced by Light, Carbon, and Inorganic Nitrogen in Chlamydomonas reinhardtii

2016
Front Plant Sci
PMCID: 4977305
PMID: 27555854
DOI: 10.3389/fpls.2016.01158

[…] e peptide modifications, respectively. Protein identification was considered as successful for Mascot scores equal or superior to 75. Protein function(s) and cellular location(s) were searched in the ChlamyCyc database, version 1.0 (May et al., ). […]

library_books

Decay of Genes Encoding the Oomycete Flagellar Proteome in the Downy Mildew Hyaloperonospora arabidopsidis

2012
PLoS One
PMCID: 3471859
PMID: 23077652
DOI: 10.1371/journal.pone.0047624

[…] ciliate.org, TIGR 2006 version), T. brucei database (tritrypdb.org, versions 2.5 and 3), or other species at Genbank. In the summary in , the common name of the C. reinhardtii ortholog as informed by ChlamyCyc (chlamyto.mpimp-golm.mpg.de) is used, except for dyneins that were recently renamed .If several strong hits were obtained in P. infestans, then the sequences were compared phylogenetically t […]

library_books

Quantitative Shotgun Proteomics Using a Uniform 15N Labeled Standard to Monitor Proteome Dynamics in Time Course Experiments Reveals New Insights into the Heat Stress Response of Chlamydomonas reinhardtii*

2011
PMCID: 3186191
PMID: 21610104
DOI: 10.1074/mcp.M110.004739

[…] ll protein sequences released in version 3.1 of the Chlamydomonas genome sequence () were combined with all sequences from Chlamydomonas mitochondrial and chloroplast proteins (downloaded from http://chlamycyc.mpimp-golm.mpg.de/files/sequences/protein/). A copy of all target sequences was shuffled and added to build the final FASTA file.As peptide identification was done within IOMIQS, all output […]


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ChlamyCyc institution(s)
Max-Planck-Institute of Molecular Plant Physiology, Potsdam, Germany; University Potsdam, Potsdam, Germany
ChlamyCyc funding source(s)
Supported by the German Federal Ministry of Education and Research by the FORSYS BMBF grant (GoFOR-SYS[23] Grant Nr. 0313924) and the Max Planck Society, and the Grant GABI MapMen, BMBF: 0101-31P4753.

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