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ChloroP specifications

Information


Unique identifier OMICS_07280
Name ChloroP
Interface Web user interface
Restrictions to use None
Computer skills Basic
Version 1.1
Stability Stable
Maintained Yes

Maintainer


  • person_outline Olof Emanuelsson

Publication for ChloroP

ChloroP citations

 (256)
library_books

Plastid genome analysis of three Nemaliophycidae red algal species suggests environmental adaptation for iron limited habitats

2018
PLoS One
PMCID: 5940233
PMID: 29738547
DOI: 10.1371/journal.pone.0196995

[…] the following analysis., protein domains were searched by the ncbi conserved domain searching tool [] to predict their functions and conserved motifs. to predict gene localization, targetp [] and chlorop [] were used based on transit peptide sequences. transmembrane domain regions were identified using tmhmm program []. the molecular function of heme oxygenase and its molecular interaction […]

library_books

In Planta Functional Analysis and Subcellular Localization of the Oomycete Pathogen Plasmopara viticola Candidate RXLR Effector Repertoire

2018
Front Plant Sci
PMCID: 5908963
PMID: 29706971
DOI: 10.3389/fpls.2018.00286

[…] petersen et al., ). predictions of subcellular localization of effectors were made using wolf psort (https://www.genscript.com/wolf-psort.html; horton et al., ), chlorop (http://www.cbs.dtu.dk/services/chlorop/; emanuelsson et al., ) and localizer (http://localizer.csiro.au/; sperschneider et al., ). protein parameters were calculated using protparam […]

library_books

The γ33 subunit of R phycoerythrin from Gracilaria chilensis has a typical double linked phycourobilin similar to γ subunit

2018
PLoS One
PMCID: 5892909
PMID: 29634783
DOI: 10.1371/journal.pone.0195656

[…] and griffithsia pacifica []. secondary structure features were calculated with psipred []. subcellular localization and the presence of chloroplast transit peptides were checked with targetp [] and chlorop [], respectively. internal sequence repeats were identified with the de novo prediction server hhrepid []., r-pe from g. ch was purified as described previously [] and the separation […]

library_books

Alternative Respiratory Pathway Component Genes (AOX and ND) in Rice and Barley and Their Response to Stress

2018
Int J Mol Sci
PMCID: 5877776
PMID: 29558397
DOI: 10.3390/ijms19030915

[…] of the subcellular localization of identified ap genes from rice and barley was carried out using publicly available subcellular localization prediction programs; targetp [], predotar [], chlorop 1.1 [] and plant-mploc []. proteins targeting to the peroxisomes were predicted using predplantpts1 []., microarray probe-set ids with high homology were retrieved for all arabidopsis, rice […]

library_books

Genome wide dissection and expression profiling of unique glyoxalase III genes in soybean reveal the differential pattern of transcriptional regulation

2018
Sci Rep
PMCID: 5859077
PMID: 29555947
DOI: 10.1038/s41598-018-23124-9

[…] pm plasma membrane.alocalization prediction by cello v.2.5 (http://cello.life.nctu.edu.tw/).blocalization prediction by psort (http://wolfpsort.org/).cchloroplast localization signal confirmed by chlorop (http://www.cbs.dtu.dk/services/chlorop/).figure 1table 2, abbreviations: ch chloroplast, cy cytosol, mt mitochondria, pm plasma membrane., alocalization prediction by cello v.2.5 […]

library_books

LasΔ5315 Effector Induces Extreme Starch Accumulation and Chlorosis as Ca. Liberibacter asiaticus Infection in Nicotiana benthamiana

2018
Front Plant Sci
PMCID: 5808351
PMID: 29467782
DOI: 10.3389/fpls.2018.00113

[…] host plant of ca. liberibacter asiaticus., downstream of the n-terminal sp sequence of las5315 effector protein, we previously found a chloroplast transit peptide domain 56 a.a. in length using chlorop 1.1 (pitino et al., ). in this work we generated a new construct with deletion of the chloroplast transit peptide, referred to as lasδ5315. the sequence was prepared by amplification […]


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ChloroP institution(s)
Department of Biochemistry, Stockholm University, Sweden

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