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ChloroP specifications

Information


Unique identifier OMICS_07280
Name ChloroP
Interface Web user interface
Restrictions to use None
Computer skills Basic
Version 1.1
Stability Stable
Maintained Yes

Maintainer


  • person_outline Olof Emanuelsson

Publication for ChloroP

ChloroP citations

 (289)
library_books

Plastid genome analysis of three Nemaliophycidae red algal species suggests environmental adaptation for iron limited habitats

2018
PLoS One
PMCID: 5940233
PMID: 29738547
DOI: 10.1371/journal.pone.0196995

[…] , protein sequences of the HMOX1 gene displayed a low similarity (20–30%) to the cyanobacterial heme oxygenase. Interestingly, the HMOX1 gene had unique N-terminal peptides, which were predicted (via ChloroP software) to target the plastid (). N-terminal peptides were present in the photosynthetic eukaryote lineages including the primary endosymbiotic lineages (red algae, Viridiplantae, and a glau […]

library_books

In Planta Functional Analysis and Subcellular Localization of the Oomycete Pathogen Plasmopara viticola Candidate RXLR Effector Repertoire

2018
Front Plant Sci
PMCID: 5908963
PMID: 29706971
DOI: 10.3389/fpls.2018.00286

[…] p://www.cbs.dtu.dk/services/SignalP/; Petersen et al., ). Predictions of subcellular localization of effectors were made using WoLF PSORT (https://www.genscript.com/wolf-psort.html; Horton et al., ), ChloroP (http://www.cbs.dtu.dk/services/ChloroP/; Emanuelsson et al., ) and LOCALIZER (http://localizer.csiro.au/; Sperschneider et al., ). Protein parameters were calculated using ProtParam (http://w […]

call_split

The γ33 subunit of R phycoerythrin from Gracilaria chilensis has a typical double linked phycourobilin similar to γ subunit

2018
PLoS One
PMCID: 5892909
PMID: 29634783
DOI: 10.1371/journal.pone.0195656
call_split See protocol

[…] ] and Griffithsia pacifica []. Secondary structure features were calculated with PSIPRED []. Subcellular localization and the presence of chloroplast transit peptides were checked with TargetP [] and ChloroP [], respectively. Internal sequence repeats were identified with the de novo prediction server HHrepID []. […]

library_books

Alternative Respiratory Pathway Component Genes (AOX and ND) in Rice and Barley and Their Response to Stress

2018
Int J Mol Sci
PMCID: 5877776
PMID: 29558397
DOI: 10.3390/ijms19030915

[…] termination of the subcellular localization of identified AP genes from rice and barley was carried out using publicly available subcellular localization prediction programs; TargetP [], Predotar [], ChloroP 1.1 [] and Plant-mPLOC []. Proteins targeting to the peroxisomes were predicted using PredPlantPTS1 []. […]

library_books

Genome wide dissection and expression profiling of unique glyoxalase III genes in soybean reveal the differential pattern of transcriptional regulation

2018
Sci Rep
PMCID: 5859077
PMID: 29555947
DOI: 10.1038/s41598-018-23124-9

[…] each GmDJ-1 proteins was predicted using default parameters of CELLO v.2.5: sub-cellular localization predictor (http://cello.life.nctu.edu.tw/), pSORT prediction software (http://wolfpsort.org/) and ChloroP (http://www.cbs.dtu.dk/services/ChloroP/). […]

library_books

LasΔ5315 Effector Induces Extreme Starch Accumulation and Chlorosis as Ca. Liberibacter asiaticus Infection in Nicotiana benthamiana

2018
Front Plant Sci
PMCID: 5808351
PMID: 29467782
DOI: 10.3389/fpls.2018.00113

[…] Downstream of the N-terminal SP sequence of Las5315 effector protein, we previously found a chloroplast transit peptide domain 56 a.a. in length using ChloroP 1.1 (Pitino et al., ). In this work we generated a new construct with deletion of the chloroplast transit peptide, referred to as LasΔ5315. The sequence was prepared by amplification of corres […]

Citations

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ChloroP institution(s)
Department of Biochemistry, Stockholm University, Sweden

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