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Chloroplast genome annotation software tools

The complete sequences of chloroplast genomes provide wealthy information regarding the evolutionary history of species. With the advance of next-generation sequencing technology, the number of completely sequenced chloroplast genomes is expected to…
DOGMA
Web

DOGMA Dual Organellar GenoMe Annotator

Allows user to extract sub-sequences of the genome (including intergenic…

Allows user to extract sub-sequences of the genome (including intergenic regions, introns, amino acid sequences of protein coding genes, etc.) for further analysis. DOGMA is a web-based annotation…

Verdant
Dataset

Verdant

A database-driven suite of tools for annotation, alignment, and tree estimation…

A database-driven suite of tools for annotation, alignment, and tree estimation of chloroplast genomes in a web-based platform. Verdant provides a number of key features designed for usability,…

GeSeq
Web

GeSeq

Generates high-quality annotations in a default mode using a curated reference…

Generates high-quality annotations in a default mode using a curated reference gene set. GeSeq enables user to upload proprietary, most up to-date or novel feature-containing reference sets. This…

CpGAVAS
Web

CpGAVAS

Allows the semi-automatic and complete annotation of a chloroplast genome…

Allows the semi-automatic and complete annotation of a chloroplast genome sequence, and the visualization, editing and analysis of the annotation results. First, it predicts protein-coding and rRNA…

Information

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