CHNOSZ statistics

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Citations per year

Number of citations per year for the bioinformatics software tool CHNOSZ
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Tool usage distribution map

This map represents all the scientific publications referring to CHNOSZ per scientific context
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Associated diseases

This word cloud represents CHNOSZ usage per disease context
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Popular tool citations

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Protocols

CHNOSZ specifications

Information


Unique identifier OMICS_25824
Name CHNOSZ
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 3.0
Computer skills Advanced
Version 1.1.3
Stability Stable
Source code URL https://cran.r-project.org/web/packages/CHNOSZ/index.html
Maintained Yes

Versioning


No version available

Documentation


Maintainers


  • person_outline Jeffrey Dick
  • person_outline Jeffrey Dick

Additional information


http://r-forge.r-project.org/projects/chnosz/

Publication for CHNOSZ

CHNOSZ citations

 (3)
library_books

Chemical composition and the potential for proteomic transformation in cancer, hypoxia, and hyperosmotic stress

2017
PeerJ
PMCID: 5463988
PMID: 28603672
DOI: 10.7717/peerj.3421

[…] teins not contained in the reference proteome were downloaded from UniProt or the NCBI website (for one study reporting GI numbers; see ). Amino acid compositions were computed using functions in the CHNOSZ package () or the ProtParam tool on the UniProt website. The amino acid compositions are stored in *.Rdata files in .R () and R packages canprot (this study) and CHNOSZ () were used to process […]

call_split

Integrating microbial and host transcriptomics to characterize asthma associated microbial communities

2015
BMC Med Genomics
PMCID: 4537781
PMID: 26277095
DOI: 10.1186/s12920-015-0121-1
call_split See protocol

[…] the microbial communities in each patient.Exploratory analysis and differential species abundance testing were performed in R 3.1.2 and Bioconductor 3.0 [, ] using packages xlsx 0.5.7, gtools 3.4.1, CHNOSZ 1.0.3.1, plyr 1.8.1, ggplot2 1.0.0, reshape2 1.4.1, gplots 2.16.0, Phyloseq 1.10.0, and DESeq2 1.6.3 [–]. Briefly, various indices (Observed, Chao1, Shannon, Simpson) were obtained using the pl […]

library_books

Composition, taxonomy and functional diversity of the oropharynx microbiome in individuals with schizophrenia and controls

2015
PeerJ
PMCID: 4556144
PMID: 26336637
DOI: 10.7717/peerj.1140

[…] Exploratory and differential species abundance analyses were performed in R 3.1.2 and Bioconductor 3.0 () using packages xlsx 0.5.7, gtools 3.4.1, CHNOSZ 1.0.3.1, plyr 1.8.1, ggplot2 1.0.0, reshape2 1.4.1, gplots 2.16.0, Phyloseq 1.10.0, and DESeq2 1.6.3 (; ; ). Briefly, various indices (Richness: Observed, Chao1, ACE; richness and evenness: Sha […]


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CHNOSZ institution(s)
Department of Earth and Planetary Science, University of California, Berkeley, CA, USA
CHNOSZ funding source(s)
Supported by grants EAR0309829 from the U.S. National Science Foundation and DE-FG02-03ER15418 from the U.S. Department of Energy.

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