ChromaGenSVM statistics

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Associated diseases

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ChromaGenSVM specifications

Information


Unique identifier OMICS_06229
Name ChromaGenSVM
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Python
Computer skills Advanced
Stability No
Maintained No

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Publication for ChromaGenSVM

ChromaGenSVM in publications

 (2)
PMCID: 5142011
PMID: 26634919
DOI: 10.1093/bib/bbv101

[…] higher positive predictive value (ppv) on untreated hela cells (maximum ppv of 66.3% based on the overlap of predictions with p300- or dhs- or trap220-binding sites) as compared with [] and []., chromagensvm [] is a typical enhancer classification system that uses svms. chromagensvm is trained on hela enhancer data (the authors also developed a second model on cd4+t cells from []) […]

PMCID: 4357786
PMID: 23685394
DOI: 10.1016/j.gpb.2013.04.002

[…] labels . a svm model has been applied to chip-seq data of five different tfs and 77% of all known muscle-specific enhancers in drosophila have been correctly predicted . in addition, using chromagensvm, which was based on five histone modification marks, 57.0% of identified potential enhancers overlapped with experimentally supported enhancers in the pilot encode region in hela cells . […]


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ChromaGenSVM institution(s)
Bioinformatics and Genomics Laboratory, WPI-Immunology Frontier Research Center (IFReC), Osaka University, Suita, Osaka, Japan
ChromaGenSVM funding source(s)
The World Premier International (WPI) Research Center Initiative, the Kishimoto Foundation; the ETHZ-JST Japanese-Swiss Cooperative Program; the Japan Society for the Promotion of Science (JSPS)

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