ChromasPro protocols

View ChromasPro computational protocol

ChromasPro statistics

You need an account to access this content

info

Citations per year

Citations chart
info

Popular tool citations

chevron_left Genome assembly chevron_right
Popular tools chart
info

Tool usage distribution map

Tool usage distribution map
info

Associated diseases

Associated diseases

ChromasPro specifications

Information


Unique identifier OMICS_01808
Name ChromasPro
Software type Package/Module
Interface Command line interface, Graphical user interface
Restrictions to use License purchase required
Operating system Windows
License Commercial
Computer skills Medium
Version 2.1.5
Stability Stable
Free trial Yes
Maintained Yes

Download


Versioning


Add your version

Maintainer


  • person_outline ChromasPro Team <>

ChromasPro in pipelines

 (37)
2018
PMCID: 5844546
PMID: 29522547
DOI: 10.1371/journal.pone.0193825

[…] final extension was conducted at 72 °c for 5 minutes. sequencing was done with an abi 3770xl automated sequencer (applied biosystems, foster city, usa). the sequences were edited using the software chromaspro (v. 1.5, technelysium ltd, uk). a multiple alignment was done using clustal w [] as implemented in the software bioedit v. 7.0.0.1 []. haplotype and nucleotide diversity, f-statistics, […]

2018
PMCID: 5848593
PMID: 29530084
DOI: 10.1186/s13071-018-2768-x

[…] expected size were bi-directionally sequenced using the secondary pcr primers on an abi 3730 genetic analyzer (applied biosystems, foster city, ca, usa). the obtained sequences were assembled using chromaspro 2.1.5.0 (http://technelysium.com.au/chromaspro.html), edited manually for sequence miscalls using bioedit 7.1.3.0 (http://www.mbio.ncsu.edu/bioedit/bioedit.html), and aligned […]

2018
PMCID: 5851554
PMID: 29538397
DOI: 10.1371/journal.pone.0193212

[…] and/or reverse direction at the eurofins genomics sequencing facility (toronto, on). the obtained sequences were visually edited, truncated to remove the primer sequences, and assembled using chromaspro (http://www.technelysium.com.au). the resulting edited sequences were compared to reference sequences in genbank through a blast search []. in bioedit [], the edited sequences were aligned […]

2018
PMCID: 5890983
PMID: 29630628
DOI: 10.1371/journal.pone.0194944

[…] ethanol. dna extraction, pcr and sequencing conditions of f-type mtdna cytochrome c oxidase subunit i (coi) followed klishko et al. [] (annealing temperature 48-50ºc). sequences were assembled using chromaspro 1.7.4 (technelysium, tewantin, australia). alignment was performed in bioedit 7.2.5 [] including all newly sequenced individuals and all sequences from the most recent and comprehensive […]

2017
PMCID: 5481957
PMID: 28645313
DOI: 10.1186/s13071-017-2233-2

[…] analyzer (thermo fisher scientific, france) using the dna sequencing bigdye terminator kit (perkin-elmer) according to the manufacturer’s instructions. the obtained sequences were assembled using chromaspro 1.7 software (technelysium pty ltd., tewantin, australia) and the sequences of primers were removed. sequences obtained in this study were aligned with other ticks or anaplasmataceae […]

ChromasPro in publications

 (236)
PMCID: 5905485
DOI: 10.1093/ve/vey010.040

[…] an in-house nested rt-pcr of the ns5 coding region. pcr products were purified and subsequently sequenced with the 3130xl abi prism genetic analyzer. sequences were finally aligned and edited using chromaspro v1.7.6, and analyzed online with hcv.geno2pheno.org. ns5a rass were present in 28.4 per cent (23/81) of all gt1 infected patients, with gt1a showing the highest prevalence followed by gt1b […]

PMCID: 5922582
PMID: 29664950
DOI: 10.1371/journal.pntd.0006397

[…] cycle sequencing kit (perkin elmer applied biosystems, foster city, ca) with an abi automated sequencer (applied biosystems). the electropherograms obtained were assembled and edited using chromaspro software (chromaspro 1.7, technelysium pty ltd., tewantin, australia) and compared with those available in the genbank database by ncbi blast (http://blast.ncbi.nlm.nih.gov/blast.cgi)., […]

PMCID: 5890983
PMID: 29630628
DOI: 10.1371/journal.pone.0194944

[…] ethanol. dna extraction, pcr and sequencing conditions of f-type mtdna cytochrome c oxidase subunit i (coi) followed klishko et al. [] (annealing temperature 48-50ºc). sequences were assembled using chromaspro 1.7.4 (technelysium, tewantin, australia). alignment was performed in bioedit 7.2.5 [] including all newly sequenced individuals and all sequences from the most recent and comprehensive […]

PMCID: 5859506
PMID: 29554979
DOI: 10.1186/s13071-018-2747-2

[…] sequencing kit and an abi prism 3100 genetic analyzer (applied biosystems), at the center for genomic technologies, hebrew university of jerusalem, israel. dna sequences were evaluated with the chromaspro software version 2.1.1 (technelysium pty ltd., south brisbane, australia) and compared for similarity with sequences available on the genbank, using blast program […]

PMCID: 5859530
PMID: 29554946
DOI: 10.1186/s13071-018-2767-y

[…] v.1.1 cycle sequencing kit (applied biosystems) on the abi prism 3730xl dna analyzer. raw data was analyzed using dna sequencing analysis software v.5.4. dna sequences were evaluated with the chromaspro software version 2.1.1 (technelysium pty ltd., south brisbane, qld, australia) and compared for similarity with sequences available in genbank, using the blast program […]

ChromasPro reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review ChromasPro