CAME specifications

Unique identifier:
OMICS_14677
Software type:
Package/Module
Restrictions to use:
None
Input format:
BSMAP, AMP
Output format:
BED
Programming languages:
Java
Computer skills:
Advanced
Stability:
Stable
Maintained:
Yes
Name:
Chromatin Accessibility and Methylation
Interface:
Command line interface
Input data:
Takes tab-eliminated files from commonly used bisulfite alignment programs and methylation calling softwares.
Output data:
Generate a tab-eliminated file that includes: chr chromosome name; start the start position of a closed (open) chromatin region; end the end position of a closed (open) chromatin region; #gchs the number of gchs within the closed (open) chromatin region; score the average methylation score of gchs within the closed (open) chromatin region; length the length of detected region.
Operating system:
Unix/Linux, Mac OS, Windows
License:
GNU General Public License version 3.0
Version:
0.0.1
Requirements:
JVM

versioning

tutorial arrow
×
Upload and version your source code
Get a DOI for each update to improve tool traceability. Archive your releases so the community can easily visualize progress on your work.
Facilitate your tool traceability
Sign up for free to upload your code and get a DOI

No versioning.

CAME distribution

download

CAME support

Maintainer

  • Jeong-Hyeon Choi <>

forum

tutorial arrow
×
Communicate with other users
Participate in the forum to get support for using tools. Ask questions about technical specifications.
Take part in the discussion
Sign up for free to ask question and share your advices

No open topic.

Credits

tutorial arrow
×
Promote your skills
Define all the tasks you managed and assign your profile the appropriate badges. Become an active member.
Promote your work
Sign up for free to badge your contributorship

Publications

Institution(s)

Cancer Center, Georgia Regents University, Augusta, GA, USA; Department of Biostatistics and Epidemiology, Georgia Regents University, Augusta, GA, USA; Department of Biochemistry and Molecular Biology, Georgia Regents University, Augusta, GA, USA; Department of Molecular Pharmacology and Experimental Therapeutics, Center for Individualized Medicine, Mayo Clinic, Chinahester, MN, USA; College of Electrical and Computer Engineering, Chungbuk National University, Cheongju, Korea; Department of Statistics, Sungshin Women’s University, Seoul, Korea; Department of Applied Research, Marine Biodiversity Institute of Korea, Seocheon, Korea

Funding source(s)

This work was partially supported by the National Institutes of Health [CA114229, AA019976, CA185833, and CA190429], Basic Science Research Program through the National Research Foundation of Korea (NRF) funded by the Ministry of Science, ICT & Future Planning (No.2013R1A2A2A01068923), the MSIP(Ministry of Science, ICT and Future Planning), Korea, under the ITRC(Information Technology Research Center) support program (IITP-2016- H8501-16-1013) supervised by the IITP(Institute for Information & communication Technology Promotion) and Brain Korea 21.

User review

tutorial arrow
×
Vote up tools and offer feedback
Give value to tools and make your expertise visible
Give your feedback on this tool
Sign up for free to join and share with the community

0 user reviews

star_border star_border star_border star_border star_border
star star star star star

0 user reviews

star_border star_border star_border star_border star_border
star star star star star

No review has been posted.

Related Tools