ChAsE specifications

Unique identifier:
OMICS_12440
Software type:
Package/Module
Restrictions to use:
None
Operating system:
Unix/Linux, Mac OS, Windows
Computer skills:
Medium
Maintained:
Yes
Name:
Chromatin Analysis and Exploration
Interface:
Graphical user interface
Input data:
The input dialog allows users to specify one or more marks as genome-wide read density data files (in Wig or bigWig formats) and a single region set containing genomic intervals of interest, such as regions around transcription start sites (in GFF or BED formats).
Programming languages:
Java
Stability:
Stable

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ChAsE support

Documentation

Maintainer

  • Mohammad Karimi <>

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Publications

Institution(s)

Graphics Usability and Visualization Lab, Simon Fraser University, Burnaby, BC, Canada; Canada’s Michael Smith Genome Sciences Centre, Vancouver, BC, Canada; Department of Pathology and Laboratory Medicine, University of British Columbia, Vancouver, BC, Canada; Department of Molecular Oncology, BC Cancer Agency, BC, Canada; Department of Medical Genetics, Life Sciences Institute, University of British Columbia, Vancouver, BC, Canada; Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, BC, Canada; Biomedical Research Centre, University of British Columbia, Vancouver, BC, Canada; Visualization and Data Analysis Lab, Faculty of Computer Science, University of Vienna, Vienna, Austria

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