- Unique identifier:
- Software type:
- Restrictions to use:
- Operating system:
- Source code URL:
- Chromatin Module INference on Trees
- Command line interface
- Input data:
- Genome-wide chromatin mark measurements of m marks in each of n cell types and a tree relating the cell types.
- Computer skills:
- GNU scientific library
- Documentation: http://pages.discovery.wisc.edu/~sroy/CMINT/manual.html
No open topic.
(Roy and Sridharan, 2017)
Chromatin module inference on cellular trajectories identifies key transition points and poised epigenetic states in diverse developmental processes.
Department of Biostatistics and Medical Informatics, University of Wisconsin-Madison, Madison, WI, USA; Department of Cell and Regenerative Biology, University of Wisconsin, Madison WI, USA; Wisconsin Institute for Discovery, Madison, WI, USA
This work was supported by UW-Madison, Sloan Foundation research fellowship, NIH BD2K grant, US-EPA grant 83573701 and NIH R01GM117339.