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REGB / Roadmap EpiGenome Browser
Offers a platform compiling epigenomic information. REGB is a web platform that allows users to browse information related to tissue-specific regulatory roles of genetic variants associated with disease. The platform gathers multiple datasets displaying data related to DNA methylation, histone modification or open chromatin. It contains a wide range of functionalities including gene set view, genome juxtaposition, chromatin interaction display, and statistical testing.
Cistrome DB / Cistrome Data Browser
A comprehensive and consistently annotated knowledgebase of all published or public ChIP-seq and DNase-seq data in mouse and human. In total, there are 2711 ChIP-Seq datasets for transcription and chromatin regulators, 2355 for histone modifications and variants, 412 DNase-Seq and 996 control datasets. Among transcription and chromatin regulators, POLR2A, CTCF, ESR1, RELA and EP300 are the most often profiled ChIP-Seq factors. For histone marks, H3K4me3, H3K27me3, H3K4me1, H3K36me3 and H3K9me3 ChIP-Seq are the most common, which together accounts for over 70% of all of the histone ChIP-Seq data.
PCSD / plant chromatin state database
Contains search tools, analysis tools and the UCSC Genome Browser for visualization. PCSD is a plant chromatin state database to integrate information on chromatin states, self-organization mapping (SOM) maps and epigenomic data features of three species, Arabidopsis thaliana, Oryza sativa and Zea mays. This application offers insights into the locations and functions of regulatory regions and genes in response to developmental and environmental signals.

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