chromVAR specifications

Unique identifier:
OMICS_16522
Software type:
Package/Module
Restrictions to use:
None
Operating system:
Unix/Linux, Mac OS, Windows
License:
MIT License
Stability:
Stable
Name:
chromatin Variability
Interface:
Command line interface
Input data:
An aligned sequencing read, a chromatin accessibility peak, a set of chromatin features representing either motif position weight matrices or genomic annotations.
Programming languages:
R
Computer skills:
Advanced
Maintained:
Yes

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chromVAR distribution

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chromVAR support

Maintainer

  • William Greenleaf <>

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Publications

Funding source(s)

This work was supported by National Institutes of Health (NIH) P50HG007735, U19AI057266, the Rita Allen Foundation and the Baxter Foundation Faculty Scholar Grant and the Human Frontiers Science Program, the Harvard Society of Fellows and Broad Institute Fellowship and by the National Science Foundation (NSF) GRFP (DGE-114747).

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