CHROMATRA specifications

Information


Unique identifier OMICS_16417
Name CHROMATRA
Alternative name CHROmatin Mapping Across TRAnscripts
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Python
Computer skills Medium
Version 1.0.0
Stability Stable
Requirements
Galaxy
Maintained Yes

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Versioning


No version available

Documentation


Maintainer


  • person_outline Michael Kobor

Publication for CHROmatin Mapping Across TRAnscripts

CHROMATRA citations

 (2)
library_books

C State: an interactive web app for simultaneous multi gene visualization and comparative epigenetic pattern search

2017
BMC Bioinformatics
PMCID: 5606219
PMID: 28929968
DOI: 10.1186/s12859-017-1786-6

[…] ope for interaction and user-based querying for target regions. A few platform-specific packages achieve some balance for target selection and graphic visualization for pattern identification such as CHROMATRA [], a plug-in specific for the Galaxy platform or PAVIS [], which links to the UCSC browser and uses a chromosome-centric approach. Complete ChIP-seq analysis packages like CisGenome [] and […]

library_books

Genome Wide Profiling of Yeast DNA:RNA Hybrid Prone Sites with DRIP Chip

2014
PLoS Genet
PMCID: 3990523
PMID: 24743342
DOI: 10.1371/journal.pgen.1004288

[…] CHROMATRA plots were generated as described previously (). Relative occupancy scores for each transcript were binned into segments of 150 bp. Transcripts were sorted by their length, transcriptional f […]

CHROMATRA funding source(s)
This work was supported by the Canadian Institute of Health Research (MOP-79442).

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