ChromContact specifications

Unique identifier:
OMICS_10911
Restrictions to use:
None
Output data:
For the output, ChromContact generates (1) a link to UCSC Genome Browser for visual inspection of the retrieved contact profiles together with other genome annotations; and (2) normalized contact counts in text-based BedGraph format for each specified cell type.
License:
GNU General Public License version 3.0
Stability:
Stable
Interface:
Web user interface
Input data:
For the input, ChromContact uses a genomic coordinate, a gene symbol, or a SNP ID in GWAS Catalog. To analyze multiple loci, users may specify the input genomic coordinates in BED format.
Programming languages:
Perl, PHP
Computer skills:
Basic
Maintained:
Yes

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Publications

Institution(s)

Medical Institute of Bioregulation, Kyushu University, Fukuoka, Japan; AMED-CREST, Japan Agency for Medical Research and Development, Fukuoka, Japan

Funding source(s)

The Grant-in-Aid for Scientific Research from the Ministry of Education, Culture, Sports, Science and Technology of Japan (26550089, 21510215, 22132005); the Kyushu University Interdisciplinary Programs in Education and Projects in Research Development (P&P)

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