ChromContact specifications

Information


Unique identifier OMICS_10911
Name ChromContact
Interface Web user interface
Restrictions to use None
Input data For the input, ChromContact uses a genomic coordinate, a gene symbol, or a SNP ID in GWAS Catalog. To analyze multiple loci, users may specify the input genomic coordinates in BED format.
Output data For the output, ChromContact generates (1) a link to UCSC Genome Browser for visual inspection of the retrieved contact profiles together with other genome annotations; and (2) normalized contact counts in text-based BedGraph format for each specified cell type.
Programming languages Perl, PHP
License GNU General Public License version 3.0
Computer skills Basic
Stability Stable
Maintained Yes

Publication for ChromContact

ChromContact institution(s)
Medical Institute of Bioregulation, Kyushu University, Fukuoka, Japan; AMED-CREST, Japan Agency for Medical Research and Development, Fukuoka, Japan
ChromContact funding source(s)
The Grant-in-Aid for Scientific Research from the Ministry of Education, Culture, Sports, Science and Technology of Japan (26550089, 21510215, 22132005); the Kyushu University Interdisciplinary Programs in Education and Projects in Research Development (P&P)

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