ChromContact specifications

Unique identifier:
Restrictions to use:
Output data:
For the output, ChromContact generates (1) a link to UCSC Genome Browser for visual inspection of the retrieved contact profiles together with other genome annotations; and (2) normalized contact counts in text-based BedGraph format for each specified cell type.
GNU General Public License version 3.0
Web user interface
Input data:
For the input, ChromContact uses a genomic coordinate, a gene symbol, or a SNP ID in GWAS Catalog. To analyze multiple loci, users may specify the input genomic coordinates in BED format.
Programming languages:
Perl, PHP
Computer skills:


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Medical Institute of Bioregulation, Kyushu University, Fukuoka, Japan; AMED-CREST, Japan Agency for Medical Research and Development, Fukuoka, Japan

Funding source(s)

The Grant-in-Aid for Scientific Research from the Ministry of Education, Culture, Sports, Science and Technology of Japan (26550089, 21510215, 22132005); the Kyushu University Interdisciplinary Programs in Education and Projects in Research Development (P&P)

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