ChroMoS protocols

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description
ChroMoS computational protocol

ChroMoS specifications

Information


Unique identifier OMICS_00145
Name ChroMoS
Alternative name Chromatin Modified SNPs
Interface Web user interface
Restrictions to use None
Computer skills Basic
Maintained Yes

Maintainer


  • person_outline Maxim Barenboim <>

Publication for Chromatin Modified SNPs

ChroMoS IN pipelines

 (2)
2014
PMCID: 4213349
PMID: 25261932
DOI: 10.1038/ng.3105

[…] which is a tool for exploring non-coding functional annotation using encode data, to evaluate the genome surrounding our snps (supplementary table 12). to assess chromatin state dynamics, we used chromos16, which has pre-computed data from encode on 9 cell types based on chip-seq analyses17. these pre-computed data have genome-segmentation performed using multivariate hidden markov-model […]

2014
PMCID: 4213349
PMID: 25261932
DOI: 10.1038/ng.3105

[…] these pre-computed data have genome-segmentation performed using multivariate hidden markov-model to reduce the combinatorial space to a set of interpretable chromatin states. the output from chromos separates data into 15 chromatin states corresponding to repressed, poised and active promoters, strong and weak enhancers, putative insulators, transcribed regions, and large-scale repressed […]

ChroMoS institution(s)
Bioinformatics and Deep-Sequencing Unit, Max-Planck Institute of Immunobiology and Epigenetics, Freiburg, Germany
ChroMoS funding source(s)
National Genome Research Network (NGRN) grant (01GS1110) of the German Federal Ministry of Education and Research (BMBF)

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