ChromTime specifications

Information


Unique identifier OMICS_25948
Name ChromTime
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data A set of genomic coordinates of aligned 95 sequencing reads from ChIP-seq.
Operating system Unix/Linux, Mac OS
Programming languages Python
Computer skills Advanced
Stability Stable
Requirements Numpy, SciPy
Maintained Yes

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Maintainer


  • person_outline Jason Ernst <>

Publication for ChromTime

ChromTime institution(s)
Bioinformatics Interdepartmental Program, University of California, Los Angeles, CA, USA; Departments of Biological Chemistry, University of California, Los Angeles, CA, USA; Eli and Edythe Broad Center of Regenerative Medicine and Stem Cell Research at UCLA, CA, USA; Computer Science Department, University of California, Los Angeles, CA, USA; Jonsson Comprehensive Cancer Center, University of California, Los Angeles, CA, USA; Molecular Biology Institute, University of California, Los Angeles, CA, USA
ChromTime funding source(s)
Supported by the CIRM Training Grant TG2-01169, the Eli and Edythe Broad Center of Regenerative Medicine and Stem Cell Research at UCLA Training Program; NIH grants R01ES024995, U01HG007912, DP1DA044371, an NSF CAREER Award #1254200 and an Alfred P. Sloan Fellowship.

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