ChromTime specifications

Unique identifier:
OMICS_25948
Interface:
Command line interface
Input data:
A set of genomic coordinates of aligned 95 sequencing reads from ChIP-seq.
Programming languages:
Python
Stability:
Stable
Maintained:
Yes
Software type:
Application/Script
Restrictions to use:
None
Operating system:
Unix/Linux, Mac OS
Computer skills:
Advanced
Requirements:
Numpy, SciPy

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ChromTime distribution

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ChromTime support

Maintainer

  • Jason Ernst <>

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Publications

Institution(s)

Bioinformatics Interdepartmental Program, University of California, Los Angeles, CA, USA; Departments of Biological Chemistry, University of California, Los Angeles, CA, USA; Eli and Edythe Broad Center of Regenerative Medicine and Stem Cell Research at UCLA, CA, USA; Computer Science Department, University of California, Los Angeles, CA, USA; Jonsson Comprehensive Cancer Center, University of California, Los Angeles, CA, USA; Molecular Biology Institute, University of California, Los Angeles, CA, USA

Funding source(s)

Supported by the CIRM Training Grant TG2-01169, the Eli and Edythe Broad Center of Regenerative Medicine and Stem Cell Research at UCLA Training Program; NIH grants R01ES024995, U01HG007912, DP1DA044371, an NSF CAREER Award #1254200 and an Alfred P. Sloan Fellowship.

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