chromVAR specifications

Information


Unique identifier OMICS_16522
Name chromVAR
Alternative name chromatin Variability
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data An aligned sequencing read, a chromatin accessibility peak, a set of chromatin features representing either motif position weight matrices or genomic annotations.
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License MIT License
Computer skills Advanced
Stability Stable
Maintained Yes

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Maintainer


  • person_outline William Greenleaf <>

Publication for chromatin Variability

chromVAR funding source(s)
This work was supported by National Institutes of Health (NIH) P50HG007735, U19AI057266, the Rita Allen Foundation and the Baxter Foundation Faculty Scholar Grant and the Human Frontiers Science Program, the Harvard Society of Fellows and Broad Institute Fellowship and by the National Science Foundation (NSF) GRFP (DGE-114747).

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