Chronux statistics

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Chronux specifications


Unique identifier OMICS_28504
Name Chronux
Software type Toolkit/Suite
Interface Command line interface, Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages C, MATLAB
License GNU General Public License version 2.0
Computer skills Advanced
Version 2.12
Stability Stable
Maintained Yes



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  • person_outline Peter Andrews <>
  • person_outline Hemant Bokil <>

Publication for Chronux

Chronux in publications

PMCID: 5956746
PMID: 29780880
DOI: 10.1523/ENEURO.0426-17.2018

[…] dividing by the total number of hours the patient spent in each respective sleep stage in the recording., spectral analysis of the fo electrodes was performed in matlab, using the freely available chronux toolbox (). analysis was performed on the lfo1, lfo2, rfo1, and rfo2 channels, as these were the deepest contacts and thus least prone to noise or artifact. channels were each normalized […]

PMCID: 5906445
PMID: 29670106
DOI: 10.1038/s41467-018-03988-1

[…] cut, mounted, and stained with cresyl violet to confirm recording sites (fig. )., acquired data were processed offline using custom matlab scripts and the multitaper spectral methods included in the chronux toolbox. differential lfps were calculated as the difference between pairs of neighboring electrodes in the same brain area to achieve spatially local measurements of electrical activities […]

PMCID: 5898699
PMID: 29662946
DOI: 10.1523/ENEURO.0447-17.2018

[…] value associated with f-i curves. for slice and in vivo comparisons in pyramidal cells, we used a 0.5-long pulse., for power spectral density curves and spectrogram analyses (, ), we used the chronux ( analysis software toolkit developed in matlab (mathworks). for spectrograms, mean-subtracted, 2-min-long voltages traces were low-pass filtered at 1000 hz […]

PMCID: 5924890
PMID: 29632187
DOI: 10.1073/pnas.1717334115

[…] owing to pseudorandom stimulus presentation and removal of some repeats from analyses after artifact rejection). spectral analyses were done using the multitaper method using functions in the chronux toolbox () ( developed for matlab. time-frequency power spectra were obtained with a single taper with a sliding window of 0.25 s to obtain a 4-hz frequency resolution. power […]

PMCID: 5881415
PMID: 29619407
DOI: 10.1523/ENEURO.0384-17.2018

[…] spikes and the lfp at different epochs during the task, we computed the spike-field coherence (sfc) of simultaneously recorded spike trains and lfp using multi-taper analysis provided by the chronux data analysis toolbox (). the sfc was calculated in 2 s windows using the coherencycpt function for each epoch (before initiation, before stimulus onset, before screen touch and after screen […]

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Chronux institution(s)
Medametrics, LLC, New York, NY, USA; Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA; School of Medicine, SUNY Downstate Medical Center, New York, NY, USA
Chronux funding source(s)
Supported by grant R01MH071744 from NIH.

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