CHSalign specifications

Unique identifier:
OMICS_11662
Restrictions to use:
None
Input format:
Bpseq, CT and Vienna dot-bracket notation
Computer skills:
Basic
Maintained:
Yes
Interface:
Web user interface
Input data:
Two RNA secondary structures where the structures are not annotated with CHS motifs or two RNA secondary structures, both containing CHS motifs annotated manually by the user
Output data:
An optimal local alignment between the two RNA structures while taking into account their junctions and coaxial helical stacking in the junctions or an optimal local alignment between the two annotated structures
Stability:
Stable

CHSalign specifications

Unique identifier:
OMICS_11662
Interface:
Command line interface
Operating system:
Unix/Linux
Stability:
Stable
Maintained:
Yes
Software type:
Application/Script
Restrictions to use:
None
Computer skills:
Advanced
Requirements:
JDK

versioning

tutorial arrow
×
Upload and version your source code
Get a DOI for each update to improve tool traceability. Archive your releases so the community can easily visualize progress on your work.
Facilitate your tool traceability
Sign up for free to upload your code and get a DOI

No versioning.

CHSalign distribution

download

CHSalign support

Maintainer

  • Jason T. L. Wang <>
  • Jason T. L. Wang <>

forum

tutorial arrow
×
Communicate with other users
Participate in the forum to get support for using tools. Ask questions about technical specifications.
Take part in the discussion
Sign up for free to ask question and share your advices

No open topic.

forum

tutorial arrow
×
Communicate with other users
Participate in the forum to get support for using tools. Ask questions about technical specifications.
Take part in the discussion
Sign up for free to ask question and share your advices

No open topic.

Credits

tutorial arrow
×
Promote your skills
Define all the tasks you managed and assign your profile the appropriate badges. Become an active member.
Promote your work
Sign up for free to badge your contributorship

Publications

Institution(s)

Bioinformatics Laboratory, Department of Computer Science, New Jersey Institute of Technology, Newark, NJ, USA; Department of Chemistry, New York University, NY, New York, USA; Courant Institute of Mathematical Sciences, New York University, NY, New York, USA

Funding source(s)

This work was supported by National Science Foundation [grant IIS-0707571], and National Institute of General Medical Sciences [grants GM100469 and GM081410].

User review

tutorial arrow
×
Vote up tools and offer feedback
Give value to tools and make your expertise visible
Give your feedback on this tool
Sign up for free to join and share with the community

0 user reviews

star_border star_border star_border star_border star_border
star star star star star

0 user reviews

star_border star_border star_border star_border star_border
star star star star star

No review has been posted.

User review

tutorial arrow
×
Vote up tools and offer feedback
Give value to tools and make your expertise visible
Give your feedback on this tool
Sign up for free to join and share with the community

0 user reviews

star_border star_border star_border star_border star_border
star star star star star

0 user reviews

star_border star_border star_border star_border star_border
star star star star star

No review has been posted.

Related Tools