chunk-TASSER specifications


Unique identifier OMICS_05147
Name chunk-TASSER
Interface Web user interface
Restrictions to use Academic or non-commercial use
Computer skills Basic
Stability No
Maintained No

Publication for chunk-TASSER

chunk-TASSER in publications

PMCID: 5593939
PMID: 28894144
DOI: 10.1038/s41598-017-10969-9

[…] and exposed surface for solvent accessibility of protein was calculated by predict protein server., multiple online tools are available for predicting the three dimensional model of protein such as chunk-tasser, meta-tasser, pro-sp3-tasser, tasser-vmt and i-tasser. initial model of flax spla2i and spla2ii was constructed using fully automated i-tasser server […]

PMCID: 4529212
PMID: 26252221
DOI: 10.1371/journal.pcbi.1004419

[…] use fragments of aligned segments in varying sizes obtained from various threading methods and follow a replica-exchange monte carlo sampling for generating full models. another variant of tasser is chunk-tasser [], which uses fragments of supersecondary structures consisting of three consecutive secondary structures as fragments and folds them independently to obtain restrains for modeling. […]

PMCID: 4139591
PMID: 25056123
DOI: 10.1007/s00894-014-2357-7

[…] use a position-specific scoring system suitable for searching databases for remotely homologous sequences []., using the threading and ab initio modeling algorithms muster [], i-tasser [], quark [], chunk-tasser [], and pro-sp3-tasser [], several potential models of nupr1a were generated with the primary sequence as input. the best model was then determined through pair-wise model comparisons […]

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chunk-TASSER institution(s)
Center for the Study of Systems Biology, School of Biology, Georgia Institute of Technology, Atlanta, GA, USA

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