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chunk-TASSER specifications

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Unique identifier OMICS_05147
Name chunk-TASSER
Interface Web user interface
Restrictions to use Academic or non-commercial use
Computer skills Basic
Stability No
Maintained No

Publication for chunk-TASSER

chunk-TASSER citations

 (5)
call_split

Molecular details of secretory phospholipase A2 from flax (Linum usitatissimum L.) provide insight into its structure and function

2017
Sci Rep
PMCID: 5593939
PMID: 28894144
DOI: 10.1038/s41598-017-10969-9
call_split See protocol

[…] Multiple online tools are available for predicting the three dimensional model of protein such as Chunk-TASSER, Meta-TASSER, Pro-sp3-TASSER, TASSER-VMT and I-TASSER. Initial model of flax sPLA2I and sPLA2II was constructed using fully automated I-TASSER server (http://zhanglab.ccmb.med.umich.edu/I […]

library_books

Modularity of Protein Folds as a Tool for Template Free Modeling of Structures

2015
PLoS Comput Biol
PMCID: 4529212
PMID: 26252221
DOI: 10.1371/journal.pcbi.1004419

[…] use fragments of aligned segments in varying sizes obtained from various threading methods and follow a replica-exchange Monte Carlo sampling for generating full models. Another variant of Tasser is chunk-Tasser [], which uses fragments of supersecondary structures consisting of three consecutive secondary structures as fragments and folds them independently to obtain restrains for modeling. Rose […]

call_split

Evidence supporting the existence of a NUPR1 like family of helix loop helix chromatin proteins related to, yet distinct from, AT hook containing HMG proteins

2014
J Mol Model
PMCID: 4139591
PMID: 25056123
DOI: 10.1007/s00894-014-2357-7
call_split See protocol

[…] Using the threading and ab initio modeling algorithms MUSTER [], I-TASSER [], QUARK [], Chunk-TASSER [], and Pro-sp3-TASSER [], several potential models of NUPR1a were generated with the primary sequence as input. The best model was then determined through pair-wise model comparisons and […]

library_books

BCL::Fold De Novo Prediction of Complex and Large Protein Topologies by Assembly of Secondary Structure Elements

2012
PLoS One
PMCID: 3500284
PMID: 23173050
DOI: 10.1371/journal.pone.0049240

[…] conformations are selected from the PDB by agreement in sequence and predicted secondary structure. Rosetta is capable of correctly folding about 50% of all sequences with less than 150 amino acids .Chunk-Tasser is another fragment assembly method for de novo structure prediction that was one of the best performing methods in the CASP8 experiment . This method generates chunks, three consecutive […]

library_books

SP5: Improving Protein Fold Recognition by Using Torsion Angle Profiles and Profile Based Gap Penalty Model

2008
PLoS One
PMCID: 2391293
PMID: 18523556
DOI: 10.1371/journal.pone.0002325

[…] ed by individual fold recognition methods through consensus predictions (For example, ROBETTA , Pmodeller6 , Fams-ace ) and/or constrained template-fragment recombination and refinement (For example, Chunk-TASSER , I-TASSER ). The prediction quality of these methods, however, relies heavily on the accuracy of initial models generated by individual fold recognition methods in the first step. Anothe […]


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chunk-TASSER institution(s)
Center for the Study of Systems Biology, School of Biology, Georgia Institute of Technology, Atlanta, GA, USA

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