Cicerone statistics

info info

Citations per year

Number of citations per year for the bioinformatics software tool Cicerone

Tool usage distribution map

This map represents all the scientific publications referring to Cicerone per scientific context
info info

Associated diseases


Popular tool citations

chevron_left 3D image analysis chevron_right
Want to access the full stats & trends on this tool?

Cicerone specifications


Unique identifier OMICS_29792
Name Cicerone
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes


  • Primates
    • Homo sapiens


No version available


  • person_outline Matthew Johnson
  • person_outline Cameron McIntyre

Publication for Cicerone

Cicerone citations


Deep brain stimulation induces sparse distributions of locally modulated neuronal activity

Sci Rep
PMCID: 5794783
PMID: 29391468
DOI: 10.1038/s41598-018-20428-8

[…] nted in the parasagittal plane with an off-vertical angle of 31.0° in Subject K and 38.5° in Subject U. Each animal also received a post-implant CT scan to plan the DBS lead implantation using Monkey Cicerone. […]


A selective role for ventromedial subthalamic nucleus in inhibitory control

PMCID: 5730370
PMID: 29199955
DOI: 10.7554/eLife.31627.019

[…] f the STN and proper positioning of the recording chamber to access it were estimated from structural MRI scans (Siemens 3 T Allegra Scanner, voxel size of 0.6 mm). An interactive 3D software system (Cicerone) was used to visualize MRI images, define the target location and predict trajectories for microelectrode penetrations (). Electrophysiological mapping was performed with penetrations spaced […]


Multimodal 7T Imaging of Thalamic Nuclei for Preclinical Deep Brain Stimulation Applications

Front Neurosci
PMCID: 4901062
PMID: 27375422
DOI: 10.3389/fnins.2016.00264

[…] ide microelectrode access to the ventral nuclei of thalamus. Reconstructed volumes of VPLo and VPLc from the lofted atlas deformation process were imported into a surgical navigation software, Monkey Cicerone (Miocinovic et al., ), to guide the electrophysiological mapping of the ventral nuclei of thalamus. A post-operative CT scan was co-registered manually to the MRI in Monkey Cicerone using lin […]


A Prospective Pilot Trial for Pallidal Deep Brain Stimulation in Huntington’s Disease

PMCID: 4539552
PMID: 26347707
DOI: 10.3389/fneur.2015.00177

[…] rally and final electrode placement was verified by a postoperative stereotactic CT. An individualized visualization of the volume of tissue activated (VTA) was performed with a customized version of Cicerone (), as previously described ().The electrodes were connected to a subcutaneous implanted Kinetra® impulse generator (Medtronic Inc., Minneapolis, MN, USA). Five to seven days after surgery (w […]


Quantitative analysis of axonal fiber activation evoked by deep brain stimulation via activation density heat maps

Front Neurosci
PMCID: 4322637
PMID: 25713510
DOI: 10.3389/fnins.2015.00028

[…] esolution, 60 gradient directions, b = 1000 s/mm2). To create these four models, we first identified the location of the STN by co-registering the structural brain dataset with a 3D brain atlas using Cicerone (Miocinovic et al., ). Second, we placed a virtual stimulating electrode (Figure ) in the posterolateral STN (models I and II) and within the anteromedial STN (models III and IV). The stimula […]


Anatomical Targets Associated with Abrupt versus Gradual Washout of Subthalamic Deep Brain Stimulation Effects on Bradykinesia

PLoS One
PMCID: 4123847
PMID: 25098453
DOI: 10.1371/journal.pone.0099663

[…] Our findings must be interpreted in the context of known limitations in our approach. First, no perfect or universally-accepted method exists for determination of electrode locations. We used Cicerone software to define the electrode location relative to the individual patient anatomy. This particular technique has proven to be effective in numerous previous studies e.g. , , –, nonetheles […]

Want to access the full list of citations?
Cicerone institution(s)
Department of Biomedical Engineering, Cleveland Clinic Foundation, Cleveland, OH, USA; Department of Biomedical Engineering, Case Western Reserve University, Cleveland, OH, USA

Cicerone reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review Cicerone