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Cildb specifications

Information


Unique identifier OMICS_06422
Name Cildb
Restrictions to use None
Maintained Yes

Publication for Cildb

Cildb citations

 (5)
call_split

Age Dependent Protein Aggregation Initiates Amyloid β Aggregation

2017
PMCID: 5434662
PMID: 28567012
DOI: 10.3389/fnagi.2017.00138
call_split See protocol

[…] Human homologs of early-aggregating proteins and late-aggregating proteins in C. elegans (as described in the results) were identified using cildb 3.0 and Ensembl genome browser 87. 83 human homologs of early-aggregating proteins and 116 human homologs of late-aggregating proteins including early-aggregating proteins that continued to aggr […]

library_books

Notch/Her12 signalling modulates, motile/immotile cilia ratio downstream of Foxj1a in zebrafish left right organizer

2017
eLife
PMCID: 5608511
PMID: 28875937
DOI: 10.7554/eLife.25165.038

[…] rofiler, an R package for comparing biological themes among gene clusters (http://bioconductor.org/packages/release/bioc/html/clusterProfiler.html []). The data was also analysed with Cildbv2 (http://cildb.cgm.cnrs-gif.fr/, []) and with Genevenn (http://genevenn.sourceforge.net/, []) in order to filter gene targets associated with motility. These lists are in Table S1a and Table S1b in . […]

library_books

MKS5 and CEP290 Dependent Assembly Pathway of the Ciliary Transition Zone

2016
PLoS Biol
PMCID: 4794247
PMID: 26982032
DOI: 10.1371/journal.pbio.1002416

[…] exomes of unaffected individuals were excluded (http://evs.gs.washington.edu/EVS/). To improve exome analysis, data are crossreferenced with a list of known cilia-related genes from Ciliome Database, Cildb v2.1 (http://cildb-archive.cgm.cnrs-gif.fr/) and transcriptomic study of cilia []. The analyses were focused on genes with homozygous variants in consanguineous families and with two heterozygou […]

library_books

Functional genome wide siRNA screen identifies KIAA0586 as mutated in Joubert syndrome

2015
eLife
PMCID: 4477441
PMID: 26026149
DOI: 10.7554/eLife.06602.021

[…] used two non-ciliary sets, the metabolome consisting of 5,445 genes () and a manually created list of housekeeping genes of 666 genes. To further hone the positive and negative training sets, we use Cildb (V3.0) a comprehensive resource aggregating experimental evidence from 15 model organisms including humans (, ). Genes appearing in the Cildb list with any evidence of involvement in ciliary rel […]

library_books

Gene expression in a paleopolyploid: a transcriptome resource for the ciliate Paramecium tetraurelia

2010
BMC Genomics
PMCID: 3091696
PMID: 20932287
DOI: 10.1186/1471-2164-11-547

[…] eria to build up a complex query (for example, find all genes that are up-regulated during meiosis and have an ortholog in human but not in yeast). The reciliation study has also been integrated into Cildb, a knowledgebase about cilia [,]. […]

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Cildb institution(s)
Centre de Génétique Moléculaire, CNRS, Gif-sur-Yvette, Université Paris-Sud, Orsay, France; Mass Spectrometry Laboratory, Institute of Biochemistry and Biophysics, Polish Academy of Sciences, Warsaw; Institute of Genetics and Biotechnology, Department of Biology, Warsaw University, Warsaw, Poland

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