Tool stats & trends
Looking to identify usage trends or leading experts?
|Restrictions to use||None|
Publication for Cildb
Age Dependent Protein Aggregation Initiates Amyloid β Aggregation
[…] Human homologs of early-aggregating proteins and late-aggregating proteins in C. elegans (as described in the results) were identified using cildb 3.0 and Ensembl genome browser 87. 83 human homologs of early-aggregating proteins and 116 human homologs of late-aggregating proteins including early-aggregating proteins that continued to aggr […]
Notch/Her12 signalling modulates, motile/immotile cilia ratio downstream of Foxj1a in zebrafish left right organizer
[…] rofiler, an R package for comparing biological themes among gene clusters (http://bioconductor.org/packages/release/bioc/html/clusterProfiler.html ). The data was also analysed with Cildbv2 (http://cildb.cgm.cnrs-gif.fr/, ) and with Genevenn (http://genevenn.sourceforge.net/, ) in order to filter gene targets associated with motility. These lists are in Table S1a and Table S1b in . […]
MKS5 and CEP290 Dependent Assembly Pathway of the Ciliary Transition Zone
[…] exomes of unaffected individuals were excluded (http://evs.gs.washington.edu/EVS/). To improve exome analysis, data are crossreferenced with a list of known cilia-related genes from Ciliome Database, Cildb v2.1 (http://cildb-archive.cgm.cnrs-gif.fr/) and transcriptomic study of cilia . The analyses were focused on genes with homozygous variants in consanguineous families and with two heterozygou […]
Functional genome wide siRNA screen identifies KIAA0586 as mutated in Joubert syndrome
[…] used two non-ciliary sets, the metabolome consisting of 5,445 genes () and a manually created list of housekeeping genes of 666 genes. To further hone the positive and negative training sets, we use Cildb (V3.0) a comprehensive resource aggregating experimental evidence from 15 model organisms including humans (, ). Genes appearing in the Cildb list with any evidence of involvement in ciliary rel […]
Gene expression in a paleopolyploid: a transcriptome resource for the ciliate Paramecium tetraurelia
[…] eria to build up a complex query (for example, find all genes that are up-regulated during meiosis and have an ortholog in human but not in yeast). The reciliation study has also been integrated into Cildb, a knowledgebase about cilia [,]. […]
Looking to check out a full list of citations?
Be the first to review Cildb