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CINNA specifications

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Unique identifier OMICS_21906
Name CINNA
Alternative name Central Informative Nodes in Network Analysis
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages R
Computer skills Advanced
Stability Stable
Maintained Yes

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Maintainers


  • person_outline Minoo Ashtiani <>
  • person_outline Mohieddin Jafari <>
  • person_outline Mohieddin Jafari <>

Publication for Central Informative Nodes in Network Analysis

CINNA in publications

 (40)
PMCID: 5672130
PMID: 29114171
DOI: 10.3897/phytokeys.87.12774

[…] fj377665, kx87242514. chascolytrum subaristatum (lam.) desv., chile: region viii (bio-bio), soreng & soreng 7005 (us), fj394577, kx873762, kx874150, kx872108, kx873390, fj377664, kx87242615., cinna latifolia (trevir. ex göpp.) griseb., canada: british columbia, saarela & percy 1073 (can-590607), –, kx873763, kx874151, kx8721098, kx873391, –, kx87242715., deschampsia cespitosa (l.) p. […]

PMCID: 5535887
PMID: 28661460
DOI: 10.3390/ijms18071394

[…] mmp-9 and cytokine production from monocyte. therefore, we investigated the effect and mechanism of a new structure and novel hdac8 inhibitor, (e)-n-hydroxy-4-methoxy-2-(biphenyl-4-yl)cinna-mide (wk2-16), on mmp-9 production and activation in lps-stimulated human monocytic thp-1 cells and its protective effects against hypercytokinemia in endotoxemic mice., to determine whether […]

PMCID: 5323441
PMID: 28275296
DOI: 10.3748/wjg.v23.i7.1163

[…] 7 min. rna was extracted from the planktonic and biofilm-forming cell cultures. for this purpose and following bacterial wash with pbs (× 3), total rna extraction was carried out using a commercial cinna pure rna kit (sinaclon bioscience). the rna samples were then treated with dnase i (roche diagnostics gmbh, germany) according to the manufacturer's recommendations. reverse transcription (rt) […]

PMCID: 5840580
PMID: 28142230
DOI: 10.3904/kjim.2015.208

[…] the control at each time point., total rna was isolated from liver samples after pump-mediated perfusion with 5% pbs. the method was based on the phenol/guanidine isothiocyanate rna zol b protocol (cinna/biotecx, houston, tx, usa). total rna (1 μg) was reverse transcribed using mmlv (moloney murine leukemia virus) reverse transcriptase (gibco, grand island, nj, usa) with random hexamer priming. […]

PMCID: 5563118
PMID: 28240008
DOI: 10.22034/APJCP.2017.18.1.43

[…] and using species-specific primers as shown in . negative controls included escherichia dh5α and deionized water. pcr was performed in a total volume of 30μl that contained 3μl of 10x pcr buffer (cinna gen, iran), 1μl of mgcl2 200mm, 2 u of taq dna polymerase (cinna gen, iran), 0.5μmof of each primer, and 25ng of bacterial dna. the pcr amplification conditions were 96°c for 180 s; then 35 […]

CINNA institution(s)
Drug Design and Bioinformatics Unit, Medical Biotechnology Department, Biotechnology Research Center, Pasteur Institute of Iran, Tehran, Iran; Department of Applied Mathematics, Faculty of Mathematical Sciences, Tarbiat Modares University, Tehran, Iran

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