Cinteny pipeline

Cinteny specifications

Information


Unique identifier OMICS_00931
Name Cinteny
Interface Application programming interface
Restrictions to use Academic or non-commercial use
Programming languages C++, PHP
License GNU General Public License version 3.0
Computer skills Basic
Stability Stable
Maintained Yes

Publication for Cinteny

Cinteny IN pipelines

 (3)
2018
PMCID: 5851622
PMID: 29538447
DOI: 10.1371/journal.pone.0194335

[…] representative gene sequences of each phyla of animal kingdom are submitted to gsds server for generating visualization of gene features such as composition and position of exons and introns. cinteny server (http://cinteny.cchmc.org/)[40] is used to analyze synteny and evolutionary distances in terms of genome rearrangements for selected organisms. cinteny server allows comparing multiple […]

2013
PMCID: 3828384
PMID: 24244720
DOI: 10.1371/journal.pone.0080824

[…] clustalw and the jalview software were used for generating and viewing the multiple sequence alignment, respectively. protein sequence similarity and identities were obtained using ncbi blastp. cinteny server (http://cinteny.cchmc.org/) and genomicus server were used for syntenic analysis., zebrafish mrna was isolated from 24 and 48 hpf old embryos using the trizol/phenol-chloroform method. […]

2013
PMCID: 3828384
PMID: 24244720
DOI: 10.1371/journal.pone.0080824

[…] software were used for generating and viewing the multiple sequence alignment, respectively. protein sequence similarity and identities were obtained using ncbi blastp. cinteny server (http://cinteny.cchmc.org/) and genomicus server were used for syntenic analysis., zebrafish mrna was isolated from 24 and 48 hpf old embryos using the trizol/phenol-chloroform method. cdna was prepared […]

Cinteny institution(s)
Department of Computer Science, University of Cincinnati, Cincinnati, OH, USA; Department of Environmental Health, University of Cincinnati College of Medicine, Cincinnati, OH, USA; Department of Informatics, Nicholas Copernicus University, Torun, Poland
Cinteny funding source(s)
This work has been supported by NIH grants R21 AI055338 and R01 AR050688.

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