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CIO specifications


Unique identifier OMICS_29013
Name CIO
Alternative name Confidence Information Ontology
Restrictions to use None
Community driven No
Data access File download
User data submission Not allowed
Maintained Yes



  • person_outline Marc Robinson-Rechavi

Publication for Confidence Information Ontology

CIO citations


DASH, the data and specimen hub of the National Institute of Child Health and Human Development

Sci Data
PMCID: 5859878
PMID: 29557977
DOI: 10.1038/sdata.2018.46

[…] the successful implementation and ongoing maintenance of DASH is the integration of science, policy and technology through the seamless coordination and communication between the NICHD Office of the CIO, in charge of the technical implementation and deployment, and the DASH Committee charged with overseeing the governance of its implementation. While many factors, such as the development of adopt […]


Phakopsora euvitis Causes Unusual Damage to Leaves and Modifies Carbohydrate Metabolism in Grapevine

Front Plant Sci
PMCID: 5623187
PMID: 29018470
DOI: 10.3389/fpls.2017.01675

[…] ribed in the previous section were used to estimate the β-values.Values of gs, Ci, and E were transformed in proportions relative to the average value of each variable in healthy leaves (gsx/gso, Cix/Cio, and Ex/Eo) in both experiments. Bastiaans model (Equation 1) was also used to fit the data of gsx/gso and Ex/Eo (dependent variables) vs. disease severity (independent variable). Linear regressio […]


Sequence learning modulates neural responses and oscillatory coupling in human and monkey auditory cortex

PLoS Biol
PMCID: 5404755
PMID: 28441393
DOI: 10.1371/journal.pbio.2000219

[…] the neuronal refractory period (1–2 ms).The timing of behavioral events, reward, and stimuli were controlled by a Windows CORTEX (Salk Institute) dual-computer system through a 12-bit D/A converter (CIO-DAS1602/12, CIO-DIO24, National Instruments). Continuous data such as audio waveforms and eye traces measured by the eye-tracking system were sent to the Plexon MAP data acquisition system (Plexon […]


Loss of Polo ameliorates APP induced Alzheimer’s disease like symptoms in Drosophila

Sci Rep
PMCID: 4657023
PMID: 26597721
DOI: 10.1038/srep16816

[…] (Noldus Information Technology). The courtship index (CI) was calculated as the percentage of time that a male courted the females during a 10-minute period. The preference index (PI) defined as (CIy-CIo)/(CIy + CIo) was calculated. The number of male flies tested per genotype was n > 28. […]


The Wound Healing and Antibacterial Activity of Five Ethnomedical Calophyllum inophyllum Oils: An Alternative Therapeutic Strategy to Treat Infected Wounds

PLoS One
PMCID: 4583440
PMID: 26406588
DOI: 10.1371/journal.pone.0138602

[…] edium was removed, cells were rinsed in PBS and plates were placed on graduated pattern before taking pictures of the wound using a Nikon Coolpix camera. PBS was removed and cells were incubated with CIO, olive oil (as negative control) or PBS (as cell control) for 15 min followed by 24h-recovery period in 2.5% FCS culture medium. At D1 (+24h) each wound was taking in picture using the same method […]


Molecular Evolution of Cytochrome bd Oxidases across Proteobacterial Genomes

Genome Biol Evol
PMCID: 5322542
PMID: 25688108
DOI: 10.1093/gbe/evv032

[…] dase such as Brucella () were separately considered from those possessing two similar forms of bd-I type oxidase such as E. coli () or Methylocystis () and those possessing both the bd-I type and the CIO type of oxidase, such as several Rhodospirillales (). Conversely, taxa that possess only one CIO type oxidase such as Rickettsia were categorized differently from those presenting two or more form […]


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CIO institution(s)
Department of Ecology and Evolution, University of Lausanne, Lausanne, Switzerland; SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland; Department of Microbiology and Immunology and Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD, USA; SIB Swiss Institute of Bioinformatics, Geneva, Switzerland; Department of Medicine and Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD, USA; Department of Bioengineering and Therapeutic Sciences, University of California, San Francisco, CA, USA; School of Information, University of South Florida, Tampa, FL, USA; Genomics Division, Lawrence Berkeley National Lab, Berkeley, CA, USA; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, UK; Swiss-Prot Group, SIB Swiss Institute of Bioinformatics, Centre Medical Universitaire, Geneva, Switzerland; ETH Zurich, Department of Computer Science, Universität. 19, Zürich, Switzerland; SIB Swiss Institute of Bioinformatics, Universität. 6, Zürich, Switzerland; University College London, London, UK
CIO funding source(s)
This work was supported by NSF DBI-1356193; the Swiss Federal Government through the state Secretariat for Education; Research and Innovation (SERI); the National Institute of Health (NIH) grant 1 U41 HG006104; the Swiss Federal Government through the state Secretariat for Education; Research and Innovation (SERI); the Swiss National Science Foundation (grant number 31003A_153341); (project AgingX); Etat de Vaud; the BBSRC MIDAS grant (BB/L024179/1); the European Commission grant Affinomics (FP7-241481) and the National Institutes of Health (R01 GM089636).

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