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Circadian rhythm databases | Gene expression data analysis

Circadian rhythms are fundamental phenomena of life that are manifested as daily oscillations in vast biological processes and driven by endogenous clocks that exist in most if not all organisms on the earth (Li and Zhang, 2015; Lakin-Thomas et al.,…
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CGDB
Dataset

CGDB Circadian Gene DataBase

A circadian gene database containing 72 800 non-redundant cycling genes in more…

A circadian gene database containing 72 800 non-redundant cycling genes in more than 148 eukaryotes. These include 1,382 genes with oscillatory transcripts that have been experimentally validated by…

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CircadiOmics
Web

CircadiOmics

Generates high-resolution maps. CircadiOmics (i) provides a common repository…

Generates high-resolution maps. CircadiOmics (i) provides a common repository for circadian cycle-related metabolic data; (ii) mines and integrates these data with other omic data across multiple…

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KMC-KaiC
Desktop

KMC-KaiC Kinetic Monte Carlo simulation of the in-vitro Kai Circadian clock

Simulates a model of the post-translational Kai circadian clock. KMC-KaiC is a…

Simulates a model of the post-translational Kai circadian clock. KMC-KaiC is a dedicated Kinetic Monte Carlo (KMC) algorithm that allows to simulate the Kai system at the level of individual KaiC…

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Bioclock
Dataset

Bioclock

A searchable database of diel and circadian microarray expression data. This…

A searchable database of diel and circadian microarray expression data. This website allows searchable browsing of this quantitative gene expression information. The visualization allows for…

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CircaDB
Dataset

CircaDB Circadian Expression Profiles Data Base

A database of circadian transcriptional profiles from time course expression…

A database of circadian transcriptional profiles from time course expression experiments from mice and humans. Each transcript's expression was evaluated by three separate algorithms, JTK_Cycle,…

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Diurnal
Dataset

Diurnal

An interface for mining and viewing diurnal and circadian microarray data for…

An interface for mining and viewing diurnal and circadian microarray data for Arabidopsis thaliana, poplar, and rice. Diurnal is searchable and provides access to several user-friendly Web-based…

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SCNseq
Dataset

SCNseq Suprachiasmatic Nucleus seq

A comprehensive and tissue-specific transcriptomic investigation of the master…

A comprehensive and tissue-specific transcriptomic investigation of the master pacemaker. SCNseq combines laser capture microdissection and RNA-seq for provide a detailed examination of the mammalian…

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