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CircadiOmics specifications

Information


Unique identifier OMICS_13346
Name CircadiOmics
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Pierre Baldi <>

Publications for CircadiOmics

CircadiOmics in publications

 (5)
PMCID: 5692188
PMID: 29098954
DOI: 10.1177/0748730417728663

[…] proteomics identifications (pride). metabolomic data are typically deposited in metabolights (ebi) or the metabolomics workbench (ucsd). circadian-specific data sets can also be deposited in circadiomics (). similarly, it is recommended that authors upload all custom-built analytical methods to online repositories such as bitbucket, github, or sourceforge., when undertaking genome-scale […]

PMCID: 5504240
PMID: 28744188
DOI: 10.3389/fnins.2017.00369

[…] metabolites peak prior to the onset of the dark phase, consistent with an advanced onset of food intake. the circadian metabolomes of these and other circadian models can be found at the website for circadiomics (http://circadiomics.igb.uci.edu/). (for data integration and analysis with the corresponding transcriptomes also see patel et al., , )., another open issue based on these results […]

PMCID: 4400861
PMID: 25941487
DOI: 10.3389/fphar.2015.00077

[…] a liquid chromatography mass spectrometry approach (). this same group subsequently applied their molecular metabolite timetable concept to successfully estimate internal body time in humans (). the circadiomics website provides a consolidated model that integrates these metabolomic data with genomics and proteomics, to better understand time-of-day coordination of physiology/pathophysiology (). […]

PMCID: 4302021
PMID: 25303020
DOI: 10.1021/bi500707c

[…] and disruption of the clock leads to metabolic disorders, including obesity and diabetes, although the detailed mechanisms are still being uncovered. to fill this gap, an interesting approach, circadiomics, was performed that combined gene ontology (pathway) analysis, transcriptome (microarray), protein–protein interaction, bmal1 chip (chromatin immunoprecipitation), transcription factor […]

PMCID: 3929910
PMID: 24567902
DOI: 10.1016/j.molmet.2013.10.005

[…] points, 5 muscles per point. a total of 277 biochemicals were identified, but only sugar metabolites will be reported here (see )., all transcriptome and metabolome data are accessible through the circadiomics website (http://circadiomics.igb.uci.edu), allowing users to search and view genes of interest and detected metabolites in ctrl and bmal1 mko skeletal muscles, as well […]


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CircadiOmics institution(s)
Department of Computer Science, University of California, Irvine (UCI), Irvine, CA, USA; Institute for Genomics and Bioinformatics, UCI, Irvine, CA, USA; Department of Biological Chemistry, UCI, Irvine, CA, USA; Center for Epigenetics and Metabolism, UCI, Irvine, CA, USA
CircadiOmics funding source(s)
This work was supported by US National Institutes of Health National Research Service Award F32 DK083881, NIH GM081634 and AG033888, Sirtris Pharmaceuticals SP-48984, National Science Foundation IIS-0513376, NIH LM010235 and NIH National Library of Medicine T15 LM07443.

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