circlncRNAnet specifications

Unique identifier:
OMICS_24928
Restrictions to use:
None
Input format:
TSV
License:
GNU General Public License version 3.0
Stability:
Stable
Interface:
Web user interface
Input data:
Expression matrix data of RNA-seq raw read counts, sample/condition categories and circRNA read counts, as quantified by KNIFE.
Output data:
Some dynamic tables and charts, including bar and box plots, scatter plot, circos plot, heatmap, and network plots, annotation information of the coding and non-coding genes.
Computer skills:
Basic
Maintained:
Yes

circlncRNAnet specifications

Unique identifier:
OMICS_24928
Interface:
Command line interface
Operating system:
Unix/Linux, Mac OS, Windows
License:
GNU General Public License version 3.0
Version:
1.1b
Maintained:
Yes
Software type:
Package/Module
Restrictions to use:
None
Programming languages:
R, Shell (Bash)
Computer skills:
Advanced
Stability:
Stable

versioning

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circlncRNAnet distribution

download

circlncRNAnet support

Maintainers

  • Bertrand Chin-MingTan <>
  • Wen-Sy Tsai <>
  • Po-Jung Huang <>
  • Bertrand Chin-MingTan <>
  • Wen-Sy Tsai <>
  • Po-Jung Huang <>

Additional information

http://120.126.1.61/circlnc/Tutorial/index.php

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Credits

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Publications

Institution(s)

Graduate Institute of Biomedical Sciences, College of Medicine, Chang Gung University, Taoyuan, Taiwan; Department of Cell and Molecular Biology, College of Medicine, Chang Gung University, Taoyuan, Taiwan; Molecular Medicine Research Center, Chang Gung University, Taoyuan, Taiwan; Division of Colon and Rectal Surgery, Department of Surgery, Chang Gung Memorial Hospital, Linkou, Taiwan; Department of Biomedical Sciences, College of Medicine, Chang Gung University, Taoyuan, Taiwan; Genomic Medicine Research Core Laboratory, Chang Gung Memorial Hospital, Linkou, Taiwan; Department of Computer Science and Information Engineering, College of Engineering, Chang Gung University, Taoyuan, Taiwan; Department of Microbiology and Immunology, College of Medicine, Chang Gung University, Taoyuan, Taiwan; Department of Neurosurgery, Linkou Medical Center, Chang Gung Memorial Hospital, Linkou, Taiwan

Funding source(s)

Supported by grants from the Ministry of Science and Technology of Taiwan (MOST104-2321-B-182-007-MY3; MOST106-2320-B-182- 035-MY3; MOST104-2320-B-182-029-MY3 and MOST105-2314-B-182-061-MY4; MOST103-2632-B-182-001, MOST104-2632-B-182-001, and MOST105-2632-B-182-001), Chang Gung Memorial Hospital (CMRPD1G0321 and CMRPD1G0322; CMRPD1F0571; CMRPG3D1513 and CMRPG3D1514; CMRPD3E0153, CMRPD1F0442, and BMRP960), the National Health Research Institute of Taiwan (NHRI-EX105-10321SI), the Ministry of Education of Taiwan, and Biosignature Research Grant CIRPD3B0013.

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