circlncRNAnet specifications

Information


Unique identifier OMICS_24928
Name circlncRNAnet
Interface Web user interface
Restrictions to use None
Input data Expression matrix data of RNA-seq raw read counts, sample/condition categories and circRNA read counts, as quantified by KNIFE.
Input format TSV
Output data Some dynamic tables and charts, including bar and box plots, scatter plot, circos plot, heatmap, and network plots, annotation information of the coding and non-coding genes.
License GNU General Public License version 3.0
Computer skills Basic
Stability Stable
Maintained Yes

Maintainers


  • person_outline Bertrand Chin-MingTan <>
  • person_outline Wen-Sy Tsai <>
  • person_outline Po-Jung Huang <>

Additional information


http://120.126.1.61/circlnc/Tutorial/index.php

Information


Unique identifier OMICS_24928
Name circlncRNAnet
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R, Shell (Bash)
License GNU General Public License version 3.0
Computer skills Advanced
Version 1.1b
Stability Stable
Maintained Yes

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Maintainers


  • person_outline Bertrand Chin-MingTan <>
  • person_outline Wen-Sy Tsai <>
  • person_outline Po-Jung Huang <>

Additional information


http://120.126.1.61/circlnc/Tutorial/index.php

Publication for circlncRNAnet

circlncRNAnet institution(s)
Graduate Institute of Biomedical Sciences, College of Medicine, Chang Gung University, Taoyuan, Taiwan; Department of Cell and Molecular Biology, College of Medicine, Chang Gung University, Taoyuan, Taiwan; Molecular Medicine Research Center, Chang Gung University, Taoyuan, Taiwan; Division of Colon and Rectal Surgery, Department of Surgery, Chang Gung Memorial Hospital, Linkou, Taiwan; Department of Biomedical Sciences, College of Medicine, Chang Gung University, Taoyuan, Taiwan; Genomic Medicine Research Core Laboratory, Chang Gung Memorial Hospital, Linkou, Taiwan; Department of Computer Science and Information Engineering, College of Engineering, Chang Gung University, Taoyuan, Taiwan; Department of Microbiology and Immunology, College of Medicine, Chang Gung University, Taoyuan, Taiwan; Department of Neurosurgery, Linkou Medical Center, Chang Gung Memorial Hospital, Linkou, Taiwan
circlncRNAnet funding source(s)
Supported by grants from the Ministry of Science and Technology of Taiwan (MOST104-2321-B-182-007-MY3; MOST106-2320-B-182- 035-MY3; MOST104-2320-B-182-029-MY3 and MOST105-2314-B-182-061-MY4; MOST103-2632-B-182-001, MOST104-2632-B-182-001, and MOST105-2632-B-182-001), Chang Gung Memorial Hospital (CMRPD1G0321 and CMRPD1G0322; CMRPD1F0571; CMRPG3D1513 and CMRPG3D1514; CMRPD3E0153, CMRPD1F0442, and BMRP960), the National Health Research Institute of Taiwan (NHRI-EX105-10321SI), the Ministry of Education of Taiwan, and Biosignature Research Grant CIRPD3B0013.

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