Circoletto pipeline

Circoletto specifications

Information


Unique identifier OMICS_07484
Name Circoletto
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Perl
License MIT License
Computer skills Advanced
Stability Stable
Maintained Yes

Download


Versioning


Add your version

Maintainers


  • person_outline Nikos Darzentas <>
  • person_outline Circoletto Team <>

Information


Unique identifier OMICS_07484
Name Circoletto
Interface Web user interface
Restrictions to use None
Input data Either two nucleotide or amino acid sequence files, the query and database or a precomputed pairwise alignment BLAST output.
Input format FASTA, TXT
Output data Sequences placed around a circle, read clockwise, starting at 12 o’clock.
Programming languages Perl
Computer skills Basic
Stability Stable
Maintained Yes

Maintainers


  • person_outline Nikos Darzentas <>
  • person_outline Circoletto Team <>

Publication for Circoletto

Circoletto IN pipeline

2014
PMCID: 4122784
PMID: 25001858
DOI: 10.1186/1471-2164-15-574

[…] of other vtx-phages identified in different vtec strains (table 1). the alignment of all the phage sequences comprised in the 100%-60% similarity range is shown in a pictogram generated with the circoletto online tool [30] (figure 2) and in another one produced by mauve software (in additional file 1: figure s1).table 1strainsimilarity%acc. no.reference e. coli o145:h28 str. […]

Circoletto institution(s)
Institute of Agrobiotechnology, Centre for Research and Technology Hellas, Thessaloniki, Greece

Circoletto reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review Circoletto