CirComPara specifications


Unique identifier OMICS_19182
Name CirComPara
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Input data Some RNA-seq reads from Illumina sequencing, references genome, gene/transcript annotations.
Input format FASTA, GTF
Operating system Unix/Linux
Programming languages Python, R
Computer skills Advanced
Version 0.1.3
Stability Stable
Registration required Yes



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Publication for CirComPara

CirComPara institution(s)
Department of Molecular Medicine, University of Padova, Padova, Italy; Department of Women’s and Children’s Health, University of Padova, Padova, Italy
CirComPara funding source(s)
Supported by SB Fondazione Cassa di Risparmio di Padova e Rovigo Progetti di Eccellenza 2011/2012 by Ministero dell’Istruzione, dell’Università e della Ricerca PRIN 2010/11 (2010NYKNS7_002) and University of Padova; GteK Fondazione Cariplo, Ministero dell’Istruzione, dell’Università e della Ricerca FIRB RBAP11TF7Z and University of Padova.

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