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Circos

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Displays large volumes of genomic rearrangement data. Circos is a visualization tool that applies a circular ideogram layout to display relationships between genomic intervals. The software provides a scalable means to illustrate relationships between genomic positions and is designed to allow flexible and easy rearrangement of elements in the image. It also contains several tools to help analyze, filter, and format data.

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1 user review

lshepard's avatar image

lshepard

Great tool to show genomic data including relationships among biological conditions or cross-sequencing (eg.: RNA-seq with WGBS) correlations etc..

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Circos versioning

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Circos classification

Circos specifications

Software type:
Package/Module
Restrictions to use:
None
Programming languages:
Perl
Computer skills:
Advanced
Stability:
Stable
Maintained:
Yes
Conda:
https://bioconda.github.io/recipes/circos/README.html
Interface:
Command line interface
Operating system:
Unix/Linux, Windows
License:
GNU General Public License version 3.0
Version:
0.69-6
Debian:
https://packages.qa.debian.org/c/circos.html

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Circos forum

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No open topic.

Circos classification

Circos specifications

Interface:
Web user interface
Computer skills:
Basic
Maintained:
Yes
Restrictions to use:
None
Stability:
Stable

Circos support

Documentation

Maintainer

  • Martin Krzywinski <>
  • Martin Krzywinski <>

Additional information

Web app : http://mkweb.bcgsc.ca/tableviewer/visualize/; Tutorials : http://circos.ca/documentation/tutorials/

Credits

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Publications

Institution(s)

Canada’s Michael Smith Genome Sciences Center, Vancouver, BC, Canada; British Columbia Cancer
Research Center, British Columbia Cancer Agency, Vancouver, BC, Canada

Funding source(s)

Supported by Genome Canada and Genome British Columbia, and the National Cancer Institute/Terry Fox Foundation.

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