CircPro specifications

Unique identifier:
OMICS_19663
Interface:
Command line interface
Input data:
Some genome reference file, gene annotation file, total RNA-Seq file, Ribo-Seq file and rRNA sequence file.
Output format:
FASTA
Programming languages:
Perl
Stability:
Stable
Source code URL:
http://bis.zju.edu.cn/CircPro/CircPro.tar.gz
Software type:
Pipeline/Workflow
Restrictions to use:
None
Output data:
An identified circRNA list.
Operating system:
Unix/Linux, Mac OS
Computer skills:
Advanced
Requirements:
BWA, Bioperl, Bowtie, Samtools, NCBI BLAST, FASTX-Toolkit
Maintained:
Yes

versioning

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CircPro support

Documentation

Maintainers

  • Ming Chen <>
  • Xianwen Meng <>

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Credits

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Publications

Institution(s)

Department of Bioinformatics, State Key Laboratory of Plant Physiology and Biochemistry, College of Life Sciences, Zhejiang University, Hangzhou, China

Funding source(s)

Supported by the National Natural Science Foundation of China (Nos: 31371328, 31450110068 and 31571366); National Key Research and Development Program of China (No.2016YFA0501704); Science Technology Department of Zhejiang Province (No.2015C32057); the Fundamental Research Funds for the Central Universities; Jiangsu Collaborative Innovation Center for Modern Crop Production and the Program for Innovative Research Team in Zhejiang University.

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