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Circular RNA databases | Non-coding RNA data analysis

Circular RNAs (circRNAs) represent a new type of regulatory noncoding RNA that only recently has been identified and cataloged. Emerging evidence indicates that circRNAs exert a new layer of post-transcriptional regulation of gene expression.Source…
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PlantcircBase
Dataset

PlantcircBase

Provides the total number of RNA-seq reads in different tissues that support…

Provides the total number of RNA-seq reads in different tissues that support the back-splicing site. PlantcircBase is a database that offers the back-splicing junction sequences of circRNAs, of which…

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TSCD
Dataset

TSCD Tissue-Specific CircRNA Database

Provides an integrating view to explore the Tissue-Specific (TS) circRNAs in…

Provides an integrating view to explore the Tissue-Specific (TS) circRNAs in human and mouse tissues. TSCD is an online resource that includes information for TS circRNAs, such as origination of…

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starBase
Dataset

starBase

It is designed for decoding Pan-Cancer and Interaction Networks of lncRNAs,…

It is designed for decoding Pan-Cancer and Interaction Networks of lncRNAs, miRNAs, competing endogenous RNAs(ceRNAs), RNA-binding proteins (RBPs) and mRNAs from large-scale CLIP-Seq (HITS-CLIP,…

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circRNADb
Dataset

circRNADb circular RNA Database

A biological information platform for circRNA containing 32,914 human circular…

A biological information platform for circRNA containing 32,914 human circular RNAs. This database provides the following main functions to users, including simple search, advanced search, browse,…

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CircInteractome
Web

CircInteractome

A web tool for mapping RBP- and miRNA-binding sites on human circRNAs.…

A web tool for mapping RBP- and miRNA-binding sites on human circRNAs. CircInteractome searches public circRNA, miRNA, and RBP databases to provide bioinformatic analyses of binding sites on circRNAs…

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exoRBase
Dataset

exoRBase

Gathers long RNA species derived from RNA-seq data analyses of human blood…

Gathers long RNA species derived from RNA-seq data analyses of human blood exosomes. exoRBase is a manually curated database which allows integration and visualization of RNA expression profiles…

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CSCD
Dataset

CSCD Cancer-Specific CircRNA Database

Gathers information about all type of circRNAs. CSCD compiles RNASeq datasets…

Gathers information about all type of circRNAs. CSCD compiles RNASeq datasets in cancer and normal samples added to an integrated circRNA database which principally focus on improvement of functional…

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AtCircDB
Dataset

AtCircDB

Provides a comprehensive and tissue-specific plant circular RNA database.…

Provides a comprehensive and tissue-specific plant circular RNA database. AtCircDB is an online resource for predicted and validated Arabidopsis hosting circular RNA candidates identified from…

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PredicircRNAToo…
Desktop

PredicircRNATool

A machine learning method for predicting circular RNAs from those of…

A machine learning method for predicting circular RNAs from those of non-circularized, expressed exons based on conformational and thermodynamic properties in the flanking introns.

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PredcircRNA
Desktop

PredcircRNA

A machine learning approach focused on distinguishing circularRNA from other…

A machine learning approach focused on distinguishing circularRNA from other lncRNAs using multiple kernel learning. Firstly different sources of discriminative features were extracted, including…

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Circ2Traits
Dataset

Circ2Traits

A comprehensive knowledge base of potential association of circular RNAs with…

A comprehensive knowledge base of potential association of circular RNAs with diseases in human. Circ2Traits stores information about circRNAs, categorized according to their potential association…

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CircNet
Dataset

CircNet

Provides the following resources: (i) novel circRNAs, (ii) integrated…

Provides the following resources: (i) novel circRNAs, (ii) integrated miRNA-target networks, (iii) expression profiles of circRNA isoforms, (iv) genomic annotations of circRNA isoforms, and (v)…

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BBBomics
Dataset

BBBomics Blood Brain Barrier omics

A comprehensive portal for blood-brain barrier transcriptomics data, obtained…

A comprehensive portal for blood-brain barrier transcriptomics data, obtained by sequencing mRNA (mRNA-seq) and microRNA (miRNA-seq) of polarized hCMEC/D3 cell monolayers. This data encompasses…

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circBase
Dataset

circBase

A database and website where merged and unified data sets of circRNAs and the…

A database and website where merged and unified data sets of circRNAs and the evidence supporting their expression can be accessed, downloaded, and browsed within the genomic context. circBase also…

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