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circRNADb specifications

Information


Unique identifier OMICS_13215
Name circRNADb
Alternative name circular RNA Database
Restrictions to use None
Community driven No
Data access Browse
User data submission Allowed
Version 1.0.0
Maintained Yes

Taxon


  • Primates
    • Homo sapiens

Documentation


Maintainer


  • person_outline Xiaofeng Song

Publication for circular RNA Database

circRNADb citations

 (3)
call_split

Luminal breast cancer specific circular RNAs uncovered by a novel tool for data analysis

2018
Oncotarget
PMCID: 5865691
PMID: 29581865
DOI: 10.18632/oncotarget.24522
call_split See protocol

[…] The Control gene set was defined by selecting genes lacking circRNA predictions considering the union between circBase [], circRNADb [] annotations and circRNAs predicted in this study. To select control genes expressed in MCF-7, a public Poly(A)+ MCF-7 RNA-Seq experiment performed in full medium (GSE48213, []) was re-ana […]

library_books

Genome wide analysis of circular RNAs in prenatal and postnatal pituitary glands of sheep

2017
Sci Rep
PMCID: 5700919
PMID: 29170496
DOI: 10.1038/s41598-017-16344-y

[…] ny frames with a length >300 bp were considered as an ORF. Furthermore, to verify the potential coding ability of sheep circRNAs, a public database for human circRNAs with protein-coding annotations (circRNADb) was used to screen for protein-coding circRNAs. The circRNAs, which are highly similarity to human protein-coding circRNAs, were considered as sheep circRNAs with coding potential and are l […]

library_books

Heterogeneous circRNA expression profiles and regulatory functions among HEK293T single cells

2017
Sci Rep
PMCID: 5663837
PMID: 29089539
DOI: 10.1038/s41598-017-14807-w

[…] in many kinds of species and implicated in important functions in physiological and disease process–. Hence, several comprehensive databases such as CircBase, Circ2Traits, circRNABase, deepBase, and circRNADb, have been developed to merge and unify information of published circRNAs and provide a series of online alignment tools to maintain structure and function prediction. To meet the demand of […]

Citations

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circRNADb institution(s)
Department of Biomedical Engineering, Nanjing University of Aeronautics and Astronautics, Nanjing, China; Department of Gynecology and Obstetrics, The First Affiliated Hospital with Nanjing Medical University, Nanjing, China; State Key Laboratory of Reproductive Medicine, Department of Histology and Embryology, Nanjing, China; Medical University, Nanjing, China; Center of Pathology and Clinical Laboratory, Sir Run Run Hospital, Affiliated with Nanjing Medical University, Nanjing, China
circRNADb funding source(s)
This project was supported by grants from National Key Research and Development Program of China (2016YFA0503300), the 973 program (2013CB911400), the National Natural Science Foundation of China (No. 61571223, No. 61171191; No. 81270700; No. 31471403), the Specialized Research Fund for the Doctoral Program of Higher Education (No. 20133218110016), the “Six Talent Peak” Project of Jiangsu Province under Grant No. SWYY-021.

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