CircTest pipeline

CircTest specifications

Information


Unique identifier OMICS_10568
Name CircTest
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data CircTest is strongly recommended to work with the output of DCC.
Output data Some candidate circles.
Operating system Unix/Linux
Programming languages Python, R
License GNU General Public License version 3.0
Computer skills Advanced
Version 0.1.0
Stability Stable
Maintained Yes

Versioning


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Documentation


Maintainer


  • person_outline Christoph Dieterich <>

Publication for CircTest

CircTest IN pipeline

2016
PMCID: 4996846
PMID: 27132142
DOI: 10.1016/j.gpb.2016.02.003

[…] several experimental conditions and replicates. dcc analysis took place with version 0.3.2 using the parameters “-m -nr 2 2 -fg -g -f -l 20”. further statistical analyses were performed with the circtest r package provided with dcc and additional custom-tailored perl scripts., cd designed the study; lc and rr performed all rna and sequencing experiments. tj and cd analysed the data and wrote […]

CircTest institution(s)
Max Planck Institute for Biology of Ageing, Cologne, Germany
CircTest funding source(s)
The Max Planck Society

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